Pairwise fitting emdb-1908 on pdb-4aq5 by gmfit










Pairwise fitting of target emdb-1908 on reference pdb-4aq5 by gmfit(PID:4089600).





RANK[1] Corr.Coeff:0.674

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1908)

display:



color:



Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1908)]







REFERENCE(pdb-4aq5)

display:



color:


b'GATING MOVEMENT IN ACETYLCHOLINE RECEPTOR ANALYSED BY TIME-RESOLVED   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.674
0.629
0.587
0.581
0.535
0.508
0.463
0.452
0.436
0.421







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4aq5"(PDB-format) or 
 "4aq5"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1908.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.967955,0.078769,0.238452 176.431870 center 0,0,0 model #1
move 39.630260,179.389351,266.904823 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4aq5)]

[Download the target GMM(emdb 1908)]

[Download gmfit result file(4089600)]