Pairwise fitting emdb-1717 on pdb-5np6 by gmfit










Pairwise fitting of target emdb-1717 on reference pdb-5np6 by gmfit(PID:517304).





RANK[1] Corr.Coeff:0.868

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1717)

display:



color:



Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1717)]







REFERENCE(pdb-5np6)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.868
0.707
0.682
0.675
0.673
0.665
0.644
0.636
0.630
0.627







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5np6"(PDB-format) or 
 "5np6"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1717.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.773703,0.177273,-0.608242 138.660895 center 0,0,0 model #1
move 159.617241,452.248397,317.055692 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!