Pairwise fitting emdb-1711 on pdb-6az0 by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-6az0 by gmfit(PID:573162).





RANK[1] Corr.Coeff:0.654

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-6az0)

display:



color:


b'MITOCHONDRIAL ATPASE PROTEASE YME1                                    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.654
0.618
0.617
0.614
0.611
0.608
0.605
0.604
0.603
0.583







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "6az0"(PDB-format) or 
 "6az0"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.445714,0.734350,-0.511926 81.895991 center 0,0,0 model #1
move 80.488457,77.818168,73.169113 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!