Pairwise fitting emdb-1711 on pdb-5vca by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-5vca by gmfit(PID:304880).





RANK[1] Corr.Coeff:0.683

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-5vca)

display:



color:


b'VCP LIKE ATPASE FROM T. ACIDOPHILUM (VAT)-SUBSTRATE BOUND CONFORMATION' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.683
0.674
0.645
0.638
0.635
0.632
0.621
0.619
0.609
0.597







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5vca"(PDB-format) or 
 "5vca"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.339725,-0.873797,-0.347945 135.712862 center 0,0,0 model #1
move 185.278350,187.051907,185.116880 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!