Pairwise fitting emdb-1711 on pdb-4bs1 by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-4bs1 by gmfit(PID:916544).





RANK[1] Corr.Coeff:0.331

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-4bs1)

display:



color:


b'MUB IS AN AAAPLUS ATPASE THAT FORMS HELICAL FILAMENTS TO CONTROL      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.331
0.318
0.300
0.297
0.287
0.282
0.282
0.281
0.260
0.252







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bs1"(PDB-format) or 
 "4bs1"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.261577,0.352179,-0.898636 175.283675 center 0,0,0 model #1
move 1.485790,28.494552,17.131066 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4bs1)]

[Download the target GMM(emdb 1711)]

[Download gmfit result file(916544)]