Pairwise fitting emdb-1711 on pdb-4bs1 by gmfit



Pairwise fitting of target emdb-1711 on reference pdb-4bs1 by gmfit(PID:4059734).

RANK[1] Corr.Coeff:0.331 [JSmol] [Molmil]
TARGET(emdb-1711)
display:
color:
Pyrococcus furiosus RNA Polymerase [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1711)]
REFERENCE(pdb-4bs1)
display:
color:
b'MUB IS AN AAAPLUS ATPASE THAT FORMS HELICAL FILAMENTS TO CONTROL ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.331 0.318 0.300 0.297 0.287 0.282 0.282 0.281 0.260 0.252

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4bs1"(PDB-format) or "4bs1"(mmCIF-format), and read it.
  2. Download the Target map "emd_1711.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.261577,0.352179,-0.898636 175.283675 center 0,0,0 model #1
    move 1.485790,28.494552,17.131066 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4bs1)] [Download the target GMM(emdb 1711)] [Download gmfit result file(4059734)]