Pairwise fitting emdb-1618 on pdb-5mw1 by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-5mw1 by gmfit(PID:640789).





RANK[1] Corr.Coeff:0.589

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

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3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-5mw1)

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b'CRYOEM STRUCTURE OF CRENACTIN DOUBLE HELICAL FILAMENT AT 3.8A         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.589
0.570
0.563
0.504
0.499
0.440
0.438
0.436
0.231
0.215







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mw1"(PDB-format) or 
 "5mw1"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.031718,-0.011672,-0.999429 179.661033 center 0,0,0 model #1
move 301.678532,303.340073,72.418215 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!