Pairwise fitting emdb-1618 on pdb-3j7t by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-3j7t by gmfit(PID:4121593).





RANK[1] Corr.Coeff:0.455

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

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3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-3j7t)

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b'CALCIUM ATPASE STRUCTURE WITH TWO BOUND CALCIUM IONS DETERMINED BY    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.455
0.363
0.352
0.319
0.313
0.277
0.273
0.271
0.265
0.248







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j7t"(PDB-format) or 
 "3j7t"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.060218,0.987088,-0.148430 147.793155 center 0,0,0 model #1
move 12.415380,-62.800127,221.017000 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j7t)]

[Download the target GMM(emdb 1618)]

[Download gmfit result file(4121593)]