Pairwise fitting emdb-1618 on pdb-3j7t by gmfit



Pairwise fitting of target emdb-1618 on reference pdb-3j7t by gmfit(PID:4091296).

RANK[1] Corr.Coeff:0.455 [JSmol] [Molmil]
TARGET(emdb-1618)
display:
color:
3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1618)]
REFERENCE(pdb-3j7t)
display:
color:
b'CALCIUM ATPASE STRUCTURE WITH TWO BOUND CALCIUM IONS DETERMINED BY ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.455 0.363 0.352 0.319 0.313 0.277 0.273 0.271 0.265 0.248

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j7t"(PDB-format) or "3j7t"(mmCIF-format), and read it.
  2. Download the Target map "emd_1618.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.060218,0.987088,-0.148430 147.793155 center 0,0,0 model #1
    move 12.415380,-62.800127,221.017000 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j7t)] [Download the target GMM(emdb 1618)] [Download gmfit result file(4091296)]