Pairwise fitting emdb-1559 on pdb-3jbz by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-3jbz by gmfit(PID:10172).

RANK[1] Corr.Coeff:0.678 [JSmol] [Jmol_S] [Molmil]
TARGET(emdb-1559)
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-3jbz)
CRYSTAL STRUCTURE OF MTOR DOCKED INTO EM MAP OF DIMERIC ATM KINASE [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.678 0.673 0.672 0.651 0.650 0.630 0.610 0.592 0.557 0.555

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3jbz"(PDB-format) or "3jbz"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.412699,0.253057,0.875010 96.777268 center 0,0,0 model #1
    move 569.801724,-759.651733,16.016817 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!