Pairwise fitting emdb-1559 on pdb-2akh by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-2akh by gmfit(PID:18535).

RANK[1] Corr.Coeff:0.685 [JSmol] [Jmol_S] [Molmil]
TARGET(emdb-1559)
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-2akh)
NORMAL MODE-BASED FLEXIBLE FITTED COORDINATES OF A NON- [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.685 0.685 0.684 0.672 0.672 0.667 0.665 0.658 0.657 0.624

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2akh"(PDB-format) or "2akh"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.361401,0.931867,-0.031828 158.759033 center 0,0,0 model #1
    move 427.288428,-80.967670,870.358531 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!