Pairwise fitting emdb-1390 on emdb-6786 by gmfit










Pairwise fitting of target emdb-1390 on reference emdb-6786 by gmfit(PID:538338).





RANK[1] Corr.Coeff:0.518

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(emdb-6786)

display:



color:


Human PI3K complex1 rigid part [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.518
0.485
0.444
0.430
0.424
0.404
0.249
0.240
0.220
0.217







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6786.map.gz", and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.408914,-0.735076,0.540789 141.134899 center 0,0,0 model #1
move 200.316850,130.218415,180.297780 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!