Pairwise fitting emdb-1390 on emdb-6665 by gmfit










Pairwise fitting of target emdb-1390 on reference emdb-6665 by gmfit(PID:4123188).





RANK[1] Corr.Coeff:0.567

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(emdb-6665)

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color:


The hexamer of full-length Cbln1 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.567
0.552
0.549
0.504
0.501
0.496
0.485
0.248
0.240
0.144







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6665.map.gz", and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.238406,0.970815,-0.026099 86.950941 center 0,0,0 model #1
move 2.278866,-2.764688,2.240588 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6665)]

[Download the target GMM(emdb 1390)]

[Download gmfit result file(4123188)]