Pairwise fitting emdb-1311 on pdb-5juu by gmfit










Pairwise fitting of target emdb-1311 on reference pdb-5juu by gmfit(PID:32415).





RANK[1] Corr.Coeff:0.851

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

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Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(pdb-5juu)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.851
0.757
0.748
0.714
0.708
0.706
0.702
0.696
0.696
0.695







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5juu"(PDB-format) or 
 "5juu"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.695613,-0.588799,0.411629 3.810333 center 0,0,0 model #1
move 222.570199,187.149334,213.333669 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5juu)]

[Download the target GMM(emdb 1311)]

[Download gmfit result file(32415)]