Pairwise fitting emdb-1252 on pdb-5vlj by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-5vlj by gmfit(PID:4111626).





RANK[1] Corr.Coeff:0.653

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-5vlj)

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b'CRYO-EM STRUCTURE OF YEAST CYTOPLASMIC DYNEIN WITH WALKER B MUTATION  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.653
0.565
0.559
0.524
0.517
0.515
0.496
0.471
0.469
0.391







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5vlj"(PDB-format) or 
 "5vlj"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.308917,-0.939414,-0.148566 160.188456 center 0,0,0 model #1
move 462.526214,89.862144,200.800782 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5vlj)]

[Download the target GMM(emdb 1252)]

[Download gmfit result file(4111626)]