Pairwise fitting emdb-1252 on pdb-5vlj by gmfit



Pairwise fitting of target emdb-1252 on reference pdb-5vlj by gmfit(PID:4111626).

RANK[1] Corr.Coeff:0.653 [JSmol] [Molmil]
TARGET(emdb-1252)
display:
color:
Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1252)]
REFERENCE(pdb-5vlj)
display:
color:
b'CRYO-EM STRUCTURE OF YEAST CYTOPLASMIC DYNEIN WITH WALKER B MUTATION ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.653 0.565 0.559 0.524 0.517 0.515 0.496 0.471 0.469 0.391

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5vlj"(PDB-format) or "5vlj"(mmCIF-format), and read it.
  2. Download the Target map "emd_1252.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.308917,-0.939414,-0.148566 160.188456 center 0,0,0 model #1
    move 462.526214,89.862144,200.800782 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5vlj)] [Download the target GMM(emdb 1252)] [Download gmfit result file(4111626)]