Pairwise fitting emdb-1252 on pdb-1mj1 by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-1mj1 by gmfit(PID:778176).





RANK[1] Corr.Coeff:0.426

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-1mj1)

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color:


b'FITTING THE TERNARY COMPLEX OF EF-TU/TRNA/GTP AND RIBOSOMAL PROTEINS  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.426
0.327
0.325
0.322
0.302
0.294
0.291
0.290
0.210
0.184







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1mj1"(PDB-format) or 
 "1mj1"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.227018,0.869211,0.439244 129.569148 center 0,0,0 model #1
move 167.255889,-240.955568,121.535727 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!