Pairwise fitting emdb-1252 on emdb-3824 by gmfit



Pairwise fitting of target emdb-1252 on reference emdb-3824 by gmfit(PID:4134235).

RANK[1] Corr.Coeff:0.606 [JSmol] [Molmil]
TARGET(emdb-1252)
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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1252)]
REFERENCE(emdb-3824)
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Cryo-EM structure of the SAGA and NuA4 coactivator subunit Tra1 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.606 0.520 0.510 0.491 0.488 0.479 0.475 0.436 0.418 0.403

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3824.map.gz", and read it.
  2. Download the Target map "emd_1252.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.703448,-0.007936,-0.710702 175.924690 center 0,0,0 model #1
    move 326.780556,349.269790,319.337392 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 3824)] [Download the target GMM(emdb 1252)] [Download gmfit result file(4134235)]