Pairwise fitting emdb-1252 on emdb-3824 by gmfit










Pairwise fitting of target emdb-1252 on reference emdb-3824 by gmfit(PID:4106577).





RANK[1] Corr.Coeff:0.606

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(emdb-3824)

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Cryo-EM structure of the SAGA and NuA4 coactivator subunit Tra1 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.606
0.520
0.510
0.491
0.488
0.479
0.475
0.436
0.418
0.403







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3824.map.gz", and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.703448,-0.007936,-0.710702 175.924690 center 0,0,0 model #1
move 326.780556,349.269790,319.337392 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 3824)]

[Download the target GMM(emdb 1252)]

[Download gmfit result file(4106577)]