Pairwise fitting emdb-1090 on emdb-8628 by gmfit



Pairwise fitting of target emdb-1090 on reference emdb-8628 by gmfit(PID:4059518).

RANK[1] Corr.Coeff:0.683 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(emdb-8628)
display:
color:
Structure of the 30S subunit, subclass II [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.683 0.640 0.566 0.532 0.513 0.504 0.464 0.420 0.334 0.325

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8628.map.gz", and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.401936,-0.081809,0.912006 177.863735 center 0,0,0 model #1
    move 114.073169,186.314031,182.427448 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 8628)] [Download the target GMM(emdb 1090)] [Download gmfit result file(4059518)]