Pairwise fitting emdb-1022 on pdb-5oyg by gmfit



Pairwise fitting of target emdb-1022 on reference pdb-5oyg by gmfit(PID:4060134).

RANK[1] Corr.Coeff:0.691 [JSmol] [Molmil]
TARGET(emdb-1022)
display:
color:
Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1022)]
REFERENCE(pdb-5oyg)
display:
color:
b'STRUCTURE OF CALCIUM-FREE MTMEM16A CHLORIDE CHANNEL AT 4.06 A ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.691 0.684 0.663 0.661 0.654 0.650 0.643 0.643 0.376 0.375

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5oyg"(PDB-format) or "5oyg"(mmCIF-format), and read it.
  2. Download the Target map "emd_1022.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.538533,-0.842002,-0.031854 92.198893 center 0,0,0 model #1
    move 256.731332,199.629743,44.569033 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5oyg)] [Download the target GMM(emdb 1022)] [Download gmfit result file(4060134)]