Pairwise fitting emdb-1022 on pdb-5oyg by gmfit










Pairwise fitting of target emdb-1022 on reference pdb-5oyg by gmfit(PID:4120171).





RANK[1] Corr.Coeff:0.691

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1022)

display:



color:



Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1022)]







REFERENCE(pdb-5oyg)

display:



color:


b'STRUCTURE OF CALCIUM-FREE MTMEM16A CHLORIDE CHANNEL AT 4.06 A         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.691
0.684
0.663
0.661
0.654
0.650
0.643
0.643
0.376
0.375







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5oyg"(PDB-format) or 
 "5oyg"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1022.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.538533,-0.842002,-0.031854 92.198893 center 0,0,0 model #1
move 256.731332,199.629743,44.569033 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5oyg)]

[Download the target GMM(emdb 1022)]

[Download gmfit result file(4120171)]