Pairwise fitting PDB-1vvj-1 on PDB-1vy4-1 by gmfit



Pairwise fitting of target PDB-1vvj-1 on reference PDB-1vy4-1 by gmfit(PID:4087907).

RANK[1] Corr.Coeff:0.958 [JSmol] [Molmil]
TARGET(PDB-1vvj-1)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(PDB-1vvj-1)]
REFERENCE(PDB-1vy4-1)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.958 0.815 0.784 0.782 0.760 0.725 0.719 0.717 0.717 0.707

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1vy4-1"(PDB-format) or "1vy4-1"(mmCIF-format), and read it.
  2. Download the Target molecule "1vvj-1"(PDB-format), and read it. "1vvj-1"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.008175,0.701208,-0.712910 179.487529 center 0,0,0 model #1
    move 51.173468,112.669548,110.191752 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 1vy4)] [Download the target GMM(pdb 1vvj)] [Download gmfit result file(4087907)]