Pairwise fitting PDB-1vvj-1 on PDB-1vy4-1 by gmfit










Pairwise fitting of target PDB-1vvj-1 on reference PDB-1vy4-1 by gmfit(PID:4131760).





RANK[1] Corr.Coeff:0.958

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(PDB-1vvj-1)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(PDB-1vvj-1)]







REFERENCE(PDB-1vy4-1)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.958
0.815
0.784
0.782
0.760
0.725
0.719
0.717
0.717
0.707







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1vy4-1"(PDB-format) or 
 "1vy4-1"(mmCIF-format), and read it.

  2.  Download the Target molecule "1vvj-1"(PDB-format), and read it.
 "1vvj-1"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.008175,0.701208,-0.712910 179.487529 center 0,0,0 model #1
move 51.173468,112.669548,110.191752 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1vy4)]

[Download the target GMM(pdb 1vvj)]

[Download gmfit result file(4131760)]