Pairwise fitting PDB-1vvj-1 on PDB-1vy4-1 by gmfit



Pairwise fitting of target PDB-1vvj-1 on reference PDB-1vy4-1 by gmfit(PID:21138).

RANK[1] Corr.Coeff:0.962 [JSmol] [Jmol_S] [Molmil]
TARGET(PDB-1vvj-1)
[Ngauss:20]
[Download superimposed target atoms (PDB)(PDB-1vvj-1)]
REFERENCE(PDB-1vy4-1)
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.962 0.962 0.801 0.801 0.770 0.766 0.751 0.746 0.728 0.714

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1vy4-1"(PDB-format) or "1vy4-1"(mmCIF-format), and read it.
  2. Download the Target molecule "1vvj-1"(PDB-format), and read it. "1vvj-1"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.006482,0.696978,-0.717063 179.637629 center 0,0,0 model #1
    move 51.681747,114.110960,108.549098 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!