Pairwise fitting PDB-1vvj-1 on PDB-1vy4-1 by gmfit










Pairwise fitting of target PDB-1vvj-1 on reference PDB-1vy4-1 by gmfit(PID:830864).





RANK[1] Corr.Coeff:0.966

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(PDB-1vvj-1)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(PDB-1vvj-1)]







REFERENCE(PDB-1vy4-1)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.966
0.812
0.788
0.755
0.734
0.724
0.719
0.710
0.707
0.703







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1vy4-1"(PDB-format) or 
 "1vy4-1"(mmCIF-format), and read it.

  2.  Download the Target molecule "1vvj-1"(PDB-format), and read it.
 "1vvj-1"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.007066,0.702813,-0.711340 179.275255 center 0,0,0 model #1
move 50.565866,112.134333,110.709573 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!