Pairwise fitting emdb-1090 on pdb-5uz4 by gmfit










Pairwise fitting of target emdb-1090 on reference pdb-5uz4 by gmfit(PID:2777601).





RANK[5] Corr.Coeff:0.523

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(pdb-5uz4)

display:



color:


b'THE CRYO-EM STRUCTURE OF YJEQ BOUND TO THE 30S SUBUNIT SUGGESTS A     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.680
0.634
0.586
0.538
0.523
0.522
0.500
0.469
0.396
0.381







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5uz4"(PDB-format) or 
 "5uz4"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.727483,-0.420144,-0.542445 168.931243 center 0,0,0 model #1
move 196.629820,140.057618,118.435108 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!