Pairwise fitting pdb-3dg4 on emdb-3508 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-3508 by gmfit(PID:1146838).





RANK[7] Corr.Coeff:0.704

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-3508)

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Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.890
0.859
0.756
0.749
0.745
0.737
0.704
0.686
0.681
0.666







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3508.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.034301,0.093317,0.995045 78.108560 center 0,0,0 model #1
move 196.981855,178.797449,188.699527 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!