+Open data
-Basic information
Entry | Database: PDB / ID: 4v2s | ||||||
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Title | Crystal structure of Hfq in complex with the sRNA RydC | ||||||
Components |
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Keywords | RNA BINDING PROTEIN/RNA / RNA BINDING PROTEIN-RNA COMPLEX / NATIVELY UNSTRUCTURED PROTEIN / PROTEIN-RNA RECOGNITION | ||||||
Function / homology | Function and homology information sRNA-mediated post-transcriptional gene silencing / positive regulation of translation, ncRNA-mediated / RNA folding chaperone / regulation of translation, ncRNA-mediated / bacterial nucleoid / bent DNA binding / regulation of RNA stability / tRNA processing / tRNA binding / regulation of DNA-templated transcription ...sRNA-mediated post-transcriptional gene silencing / positive regulation of translation, ncRNA-mediated / RNA folding chaperone / regulation of translation, ncRNA-mediated / bacterial nucleoid / bent DNA binding / regulation of RNA stability / tRNA processing / tRNA binding / regulation of DNA-templated transcription / DNA binding / RNA binding / ATP binding / cytosol Similarity search - Function | ||||||
Biological species | ESCHERICHIA COLI (E. coli) SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.48 Å | ||||||
Authors | Dimastrogiovanni, D. / Frohlich, K.S. / Bruce, H.A. / Bandyra, K.J. / Hohensee, S. / Vogel, J. / Luisi, B.F. | ||||||
Citation | Journal: Elife / Year: 2014 Title: Recognition of the small regulatory RNA RydC by the bacterial Hfq protein. Authors: Dimastrogiovanni, D. / Frohlich, K.S. / Bandyra, K.J. / Bruce, H.A. / Hohensee, S. / Vogel, J. / Luisi, B.F. | ||||||
History |
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Remark 700 | SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 30-STRANDED BARREL THIS IS REPRESENTED BY A 31-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4v2s.cif.gz | 128.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4v2s.ent.gz | 96.1 KB | Display | PDB format |
PDBx/mmJSON format | 4v2s.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 4v2s_validation.pdf.gz | 503.4 KB | Display | wwPDB validaton report |
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Full document | 4v2s_full_validation.pdf.gz | 527.5 KB | Display | |
Data in XML | 4v2s_validation.xml.gz | 21 KB | Display | |
Data in CIF | 4v2s_validation.cif.gz | 29.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/v2/4v2s ftp://data.pdbj.org/pub/pdb/validation_reports/v2/4v2s | HTTPS FTP |
-Related structure data
Related structure data | 3rerS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: _ / Refine code: _
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