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Yorodumi- PDB-1hbp: CRYSTAL STRUCTURE OF LIGANDED AND UNLIGANDED FORMS OF BOVINE PLAS... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1hbp | ||||||
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Title | CRYSTAL STRUCTURE OF LIGANDED AND UNLIGANDED FORMS OF BOVINE PLASMA RETINOL-BINDING PROTEIN | ||||||
Components | RETINOL BINDING PROTEINRetinol-binding protein | ||||||
Keywords | RETINOL TRANSPORT | ||||||
Function / homology | Function and homology information retinol transport / retinol transmembrane transporter activity / retinal binding / retinol binding / extracellular space Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.9 Å | ||||||
Authors | Zanotti, G. / Monaco, H.L. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1993 Title: Crystal structure of liganded and unliganded forms of bovine plasma retinol-binding protein. Authors: Zanotti, G. / Berni, R. / Monaco, H.L. #1: Journal: J.Mol.Biol. / Year: 1993 Title: Crystal Structure of the Trigonal Form of Human Plasma Retinol-Binding Protein at 2.5 Angstroms Resolution Authors: Zanotti, G. / Ottonello, S. / Berni, R. / Monaco, H.L. #2: Journal: Eur.J.Biochem. / Year: 1990 Title: The Bovine Plasma Retinol-Binding Protein. Amino Acid Sequence, Interaction with Transthyretin, Crystallization and Preliminary X-Ray Data Authors: Berni, R. / Stoppini, M. / Zapponi, C.M. / Meloni, M.L. / Monaco, H.L. / Zanotti, G. | ||||||
History |
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Remark 700 | SHEET THE SHEET PRESENTED AS *S1* ON SHEET RECORDS BELOW IS ACTUALLY AN EIGHT-STRANDED BETA-BARREL. ...SHEET THE SHEET PRESENTED AS *S1* ON SHEET RECORDS BELOW IS ACTUALLY AN EIGHT-STRANDED BETA-BARREL. THIS IS REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1hbp.cif.gz | 47.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1hbp.ent.gz | 37.3 KB | Display | PDB format |
PDBx/mmJSON format | 1hbp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hb/1hbp ftp://data.pdbj.org/pub/pdb/validation_reports/hb/1hbp | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 21095.654 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / References: UniProt: P18902 |
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#2: Chemical | ChemComp-RTL / |
#3: Water | ChemComp-HOH / |
Nonpolymer details | RETINOL IS AN ALCOHOLIC FORM OF VITAMIN A. (ALL-E)-3,7-DIMETHYL-9-(2,6,6-TRIMETHYLCYCLOHEX-1-EN-1- ...RETINOL IS AN ALCOHOLIC FORM OF VITAMIN A. (ALL-E)-3,7-DIMETHYL-9-(2,6,6-TRIMETHYLC |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.04 Å3/Da / Density % sol: 39.73 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS Method: microdialysis / PH range low: 5.3 / PH range high: 5 | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
-Processing
Software |
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Refinement | Highest resolution: 1.9 Å /
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Refinement step | Cycle: LAST / Highest resolution: 1.9 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 9 Å / σ(I): 1 / Rfactor obs: 0.19 / Num. reflection obs: 12126 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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