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Yorodumi Species
- Taxonomy data in EMDB/PDB/SASBDB -

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Search query

Name, Taxonomy-ID, or Keywords:

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Result of keyword search

Showing all 17 items for keyword: "Cow"

NameEMDBPDBSASBDB
Bordetella parapertussis (bacteria)0140
Burkholderia pseudomallei (bacteria)11580
Burkholderia mallei (bacteria)020
Bos taurus (cattle)285275821
Gypsophila vaccaria (bladder-soapwort)0100
Vigna unguiculata (cowpea)070
Vigna unguiculata subsp. cylindrica (catjang)060
Cowpox virus070
Cowpox virus (Brighton Red)000
Ectromelia virus Moscow000
Rotavirus A RVA/Cow-tc/USA/B223/1983/G10P[11]000
Rotavirus A cow/USA/WC3/1981 G6P7[5]000
Cowpea chlorotic mottle virus020
Porcine enteric sapovirus swine/Cowden/1980/US000
Cowpea mosaic virus670
Cowpea mosaic virus strain SB000
Southern cowpea mosaic virus000

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About Yorodumi Species

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News

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi

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Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

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Yorodumi Speices

Taxonomy data in EMDB/PDB/SASBDB

  • Taxonomy database of sample sources of data in EMDB/PDB/SASBDB

Related info.: EMDB / PDB / SASBDB / Comparison of 3 databanks

Read more