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Yorodumi Species
- Taxonomy data in EMDB/PDB/SASBDB -

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Search query

Name, Taxonomy-ID, or Keywords:

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Result of keyword search

Showing all 18 items for keyword: "Unidentified"

NameEMDBPDBSASBDB
unidentified prokaryotic organism (environmental samples)040
uncultured marine bacterium (environmental samples)020
uncultured gamma proteobacterium (environmental samples)000
uncultured actinomycete (environmental samples)040
actinomycete ATCC 53650 (bacteria)010
unidentified 'CNM-group' bacterium HXN600 (bacteria)010
Monomastix sp. OKE-1, unidentified (plant)010
unidentified plasmid (others)010
unidentified (others)2422680
unidentified adenovirus450
unidentified baculovirus000
unidentified herpesvirus014
unidentified entomopoxvirus020
Ebola virus sp.1830
unidentified influenza virus13530
unidentified human coronavirus0120
unidentified tobacco necrosis virus030
unidentified phage (virus)4130

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About Yorodumi Species

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News

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi

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Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

Read more

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Yorodumi Speices

Taxonomy data in EMDB/PDB/SASBDB

  • Taxonomy database of sample sources of data in EMDB/PDB/SASBDB

Related info.: EMDB / PDB / SASBDB / Comparison of 3 databanks

Read more