- PDB-2dmq: Solution structure of the homeobox domain of LIM/homeobox protein Lhx9 -
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基本情報
登録情報
データベース: PDB / ID: 2dmq
タイトル
Solution structure of the homeobox domain of LIM/homeobox protein Lhx9
要素
LIM/homeobox protein Lhx9
キーワード
DNA BINDING PROTEIN (DNA結合タンパク質) / homeobox domain (ホメオボックス) / three helices with the DNA binding helix-turn-helix motif / Structural Genomics (構造ゲノミクス) / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI
機能・相同性
機能・相同性情報
dorsal spinal cord interneuron anterior axon guidance / gonad morphogenesis / chromatin => GO:0000785 / female gonad development / RNA polymerase II transcription regulatory region sequence-specific DNA binding / neuron differentiation / Regulation of expression of SLITs and ROBOs / male gonad development / sequence-specific double-stranded DNA binding / cell population proliferation ...dorsal spinal cord interneuron anterior axon guidance / gonad morphogenesis / chromatin => GO:0000785 / female gonad development / RNA polymerase II transcription regulatory region sequence-specific DNA binding / neuron differentiation / Regulation of expression of SLITs and ROBOs / male gonad development / sequence-specific double-stranded DNA binding / cell population proliferation / DNA-binding transcription factor activity, RNA polymerase II-specific / negative regulation of DNA-templated transcription / positive regulation of transcription by RNA polymerase II / metal ion binding / 細胞核 類似検索 - 分子機能
タイプ: Bruker AVANCE / 製造業者: Bruker / モデル: AVANCE / 磁場強度: 800 MHz
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解析
NMR software
名称
バージョン
開発者
分類
XwinNMR
3.5
Bruker
collection
NMRPipe
20030801
Delaglio, F.
解析
NMRView
5.0.4
Johnson. B.A.
データ解析
KUJIRA
0.965
Kobayashi, N.
データ解析
CYANA
2.0.17
Guntert, P.
構造決定
CYANA
2.0.17
Guntert, P.
精密化
精密化
手法: torsion angle dynamics / ソフトェア番号: 1
代表構造
選択基準: lowest energy
NMRアンサンブル
コンフォーマー選択の基準: target function, structures with the lowest energy, structures with the least restraint violations 計算したコンフォーマーの数: 100 / 登録したコンフォーマーの数: 20