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- SASDBJ7: Pomacea maculata perivitellin 1 (PmPV1) -

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Basic information

Entry
Database: SASBDB / ID: SASDBJ7
SamplePomacea maculata perivitellin 1
  • Pomacea maculata perivitellin 1 (protein), PmPV1, Pomacea maculata (Perry, 1810)
Biological speciesPomacea maculata (Perry
1810)
CitationDate: 2017 Dec
Title: Convergent evolution of plant and animal embryo defences by hyperstable non-digestible storage proteins
Authors: Pasquevich M / Dreon M / Qiu J / Mu H
Contact author
  • Marcos Dreon

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #815
Type: dummy / Radius of dummy atoms: 3.00 A / Chi-square value: 11.066
Search similar-shape structures of this assembly by Omokage search (details)
Model #816
Type: dummy / Radius of dummy atoms: 3.00 A / Chi-square value: 11.134
Search similar-shape structures of this assembly by Omokage search (details)
Model #817
Type: dummy / Radius of dummy atoms: 3.00 A / Chi-square value: 11.318
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Pomacea maculata perivitellin 1 / Specimen concentration: 1.37-0.66
BufferName: 100 mM Phosphate Buffer / pH: 7.4
Entity #458Name: PmPV1 / Type: protein / Description: Pomacea maculata perivitellin 1 / Formula weight: 23.184 / Num. of mol.: 12 / Source: Pomacea maculata (Perry, 1810)
Sequence: MAATLVLLLA MSTLLTSGVE MIKHDLVFLE VDSGSCKENA SKIFQDKSMI PGEVSGQVIG TSKFFAVLRE QDLARMNLKD VKEVVPVTKL EDYLESWNAS WRIHRDINET DLWLFKVSPN PKSKTLQQYD NQVRHGVRIA APVMENFPNY ILLSKGVFPP KYYIFINKKE ...Sequence:
MAATLVLLLA MSTLLTSGVE MIKHDLVFLE VDSGSCKENA SKIFQDKSMI PGEVSGQVIG TSKFFAVLRE QDLARMNLKD VKEVVPVTKL EDYLESWNAS WRIHRDINET DLWLFKVSPN PKSKTLQQYD NQVRHGVRIA APVMENFPNY ILLSKGVFPP KYYIFINKKE EFPKDFRNIL DIFGGPGAVK VESLYVRILI SWQ

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Experimental information

BeamInstrument name: Brazilian Synchrotron Light Laboratory SAXS2 Beamline
City: Campinas / 国: Brazil / Type of source: X-ray synchrotron / Wavelength: 1.55 Å / Dist. spec. to detc.: 1.51154 mm
DetectorName: MAR 165 CCD
Scan
Title: Pomacea maculata perivitellin 1 / Measurement date: Mar 26, 2015 / Cell temperature: 25 °C / Exposure time: 300 sec. / Number of frames: 5 / Unit: 1/nm /
MinMax
Q0.0974 2.1123
Distance distribution function P(R)
Sofotware P(R): GNOM 4.5a / Number of points: 208 /
MinMax
Q0.1649 1.91
P(R) point9 216
R0 14.32
Result
Type of curve: single_conc /
ExperimentalPorod
MW294 kDa335 kDa
Volume-537 nm3

P(R)GuinierGuinier errorP(R) error
Forward scattering, I00.001938 0.0019 2.0E-5 -
Radius of gyration, Rg4.26 nm4.18 nm0.07 0.002

MinMax
D-14.32
Guinier point3 28

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