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- SASDBE6: Single stranded poly-deoxyadenosine DNA (30mer, dA30) -

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Basic information

Entry
Database: SASBDB / ID: SASDBE6
SampleSingle stranded poly-deoxyadenosine DNA (30mer, dA30)
  • Poly-deoxyadenosine (30mer) (DNA), dA30
CitationDate: 2016 Dec 29
Title: Visualizing single-stranded nucleic acids in solution
Authors: Plumridge A / Meisburger S
Contact author
  • Alex Plumridge (Cornell University, Ithaca, NY, United States)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #613
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 1
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #614
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 2
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #616
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 3
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #617
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 4
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #619
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 5
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #620
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 6
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #621
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 7
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #622
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 8
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #623
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 9
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #624
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 10
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #625
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 11
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #626
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 12
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #627
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 13
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #628
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 14
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #629
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 15
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #630
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 16
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #631
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 17
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #632
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 18
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #633
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 19
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)
Model #634
Type: dummy / Software: Custom - GAJOE (GAJOE1.3) / Radius of dummy atoms: 1.90 A
Comment: Custom SAXS model building/fitting method - state 20
Chi-square value: 0.964324 / P-value: 0.032000
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Single stranded poly-deoxyadenosine DNA (30mer, dA30) / Specimen concentration: 0.45-1.80
BufferName: 1mM Na MOPS, 20mM NaCl / pH: 7
Entity #401Name: dA30 / Type: DNA / Description: Poly-deoxyadenosine (30mer) / Formula weight: 9.3 / Num. of mol.: 1
Sequence:
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA

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Experimental information

BeamInstrument name: Cornell High Energy Synchrotron Source (CHESS) G1
City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.111 Å / Dist. spec. to detc.: 1.8 mm
DetectorName: Finger Lakes CCD / Type: CCD
Scan
Title: dA30 / Measurement date: Apr 1, 2015 / Exposure time: 10 sec. / Number of frames: 20 / Unit: 1/A /
MinMax
Q0.01 0.29
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 270 /
MinMax
Q0.021 0.29
P(R) point1 270
R0 95
Result
Type of curve: extrapolated
GuinierGuinier errorP(R)
Forward scattering, I066.09 0.39 -
Radius of gyration, Rg2.72 nm0.03 2.885 nm

MinMax
D-9.5
Guinier point12 36

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