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- SASDFZ3: Escherichia coli YjhC (YjhC) -

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Basic information

Entry
Database: SASBDB / ID: SASDFZ3
SampleEscherichia coli YjhC
  • Escherichia coli YjhC (protein), YjhC, Escherichia coli (strain K12)
Biological speciesEscherichia coli (strain K12) (bacteria)
Contact author
  • Chris Horne (University of Canterbury)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #2862
Type: atomic / Chi-square value: 0.623
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Escherichia coli YjhC / Specimen concentration: 8 mg/ml
BufferName: 20 mM Tris, 150 mM NaCl, 0.1 % (w/v) sodium azide, 5 % (v/v) glycerol
pH: 8
Entity #1444Name: YjhC / Type: protein / Description: Escherichia coli YjhC / Formula weight: 43.048 / Num. of mol.: 2 / Source: Escherichia coli (strain K12)
Sequence: HHHHHHSSGL VPRGSMINYG VVGVGYFGAE LARFMNMHDN AKITCVYDPE NGENIARELQ CINMSSLDAL VSSKLVDCVI VATPNYLHKE PVIKAAKNKK HVFCEKPIAL SYEDCVDMVK ACKEAGVTFM AGHIMNFFNG VQYARKLIKE GVIGEILSCH TKRNGWENKQ ...Sequence:
HHHHHHSSGL VPRGSMINYG VVGVGYFGAE LARFMNMHDN AKITCVYDPE NGENIARELQ CINMSSLDAL VSSKLVDCVI VATPNYLHKE PVIKAAKNKK HVFCEKPIAL SYEDCVDMVK ACKEAGVTFM AGHIMNFFNG VQYARKLIKE GVIGEILSCH TKRNGWENKQ ERLSWKKMKE QSGGHLYHHI HELDCVQHLL GEIPETVTMI GGNLAHSGPG FGNEDDMLFM TLEFPSGKLA TLEWGSAFNW PEHYVIINGT KGSIKIDMQE TAGSLRIGGQ TKHFLVHETQ EEDDDRRKGN MTSEMDGAIA YGHPGKKTPL WLASLIRKET LFLHNILCGA KPEEDYIDLL NGEAAMSAIA TADAATLSRS QDRKVKISEI IKHTSVM

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Experimental information

BeamInstrument name: Australian Synchrotron SAXS/WAXS / City: Melbourne / 国: Australia / Shape: Point / Type of source: X-ray synchrotron / Wavelength: 0.10332 Å / Dist. spec. to detc.: 1.6 mm
DetectorName: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm
Scan
Title: Escherichia coli YjhC / Measurement date: Apr 12, 2018 / Storage temperature: 4 °C / Cell temperature: 12 °C / Exposure time: 1 sec. / Number of frames: 400 / Unit: 1/A /
MinMax
Q0.0121 0.5001
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 331 /
MinMax
Q0.0149948 0.256204
P(R) point1 331
R0 107.1
Result
Type of curve: sec /
ExperimentalPorod
MW84.5 kDa81 kDa
Volume-130 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I00.04925 1.424E-5 0.049 0.0001
Radius of gyration, Rg3.18 nm0.013 3.114 nm0.036

MinMax
D-10.71
Guinier point5 41

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