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- SASDF96: Olfactomedin-1 BMY isoform (Noelin, Olfm1) -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDF96
SampleOlfactomedin-1 BMY isoform
  • Noelin (protein), Olfm1, Mus musculus
Function / homology
Function and homology information


extrinsic component of synaptic membrane / regulation of amyloid-beta formation / atrioventricular valve formation / neuronal signal transduction / negative regulation of neuron migration / cardiac epithelial to mesenchymal transition / regulation of axon extension / negative regulation of amyloid-beta formation / AMPA glutamate receptor complex / axonal growth cone ...extrinsic component of synaptic membrane / regulation of amyloid-beta formation / atrioventricular valve formation / neuronal signal transduction / negative regulation of neuron migration / cardiac epithelial to mesenchymal transition / regulation of axon extension / negative regulation of amyloid-beta formation / AMPA glutamate receptor complex / axonal growth cone / positive regulation of epithelial to mesenchymal transition / synaptic membrane / nervous system development / amyloid-beta binding / perikaryon / positive regulation of apoptotic process / axon / negative regulation of gene expression / neuronal cell body / glutamatergic synapse / positive regulation of gene expression / endoplasmic reticulum / extracellular space / identical protein binding
Similarity search - Function
Noelin / Noelin domain / Neurogenesis glycoprotein / Olfactomedin-like domain / Olfactomedin-like domain / Olfactomedin-like domain profile. / Olfactomedin-like domains / Quinoprotein amine dehydrogenase, beta chain-like / Endoplasmic reticulum targeting sequence.
Similarity search - Domain/homology
Biological speciesMus musculus (house mouse)
Contact author
  • Matti Pronker (MRC Laboratory of Molecular Biology)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2812
Type: dummy / Software: (r5577) / Radius of dummy atoms: 4.00 A / Symmetry: C2 / Chi-square value: 1.238
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Olfactomedin-1 BMY isoform / Specimen concentration: 0.61 mg/ml
BufferName: 150 mM NaCl, 20 mM HEPES / pH: 7.5
Entity #1483Name: Olfm1 / Type: protein / Description: Noelin / Formula weight: 18 / Num. of mol.: 4 / Source: Mus musculus / References: UniProt: O88998-2
Sequence:
GSMITNWMSQ TLPSLVGLNT TRLSAASGGT LDRSTGVLPT NPEESWQVYS SAQDSEGRCI CTVVAPQQTM CSRDARTKQL RQLLEKVQNM SQSIEVLDRR TQRDLQYVEK MENQMKGLET KFKQVEESHK QHLARQFKGA AAHHHHHH

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.09919 Å / Dist. spec. to detc.: 2.864 mm
DetectorName: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm
Scan
Title: Olfactomedin-1 BMY isoform / Measurement date: Feb 5, 2016 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 1 sec. / Number of frames: 10 / Unit: 1/nm /
MinMax
Q0.0327 4.9336
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 293 /
MinMax
Q0.01126 0.1486
P(R) point1 293
R0 163.2
Result
Type of curve: single_conc
ExperimentalStandardStandard errorPorod
MW77 kDa84 kDa0.05 -
Volume---160 nm3

P(R)GuinierGuinier error
Forward scattering, I0101 84 0.05
Radius of gyration, Rg5.26 nm5.4 nm0.03

MinMax
D-16.32
Guinier point20 42

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