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Yorodumi- SASDC37: Saposin nanoparticle (SapNP) SapA:SoyPI (saposin-a, sapA + L-α-ph... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDC37 |
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Sample | Saposin nanoparticle (SapNP) SapA:SoyPI
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Function / homology | Function and homology information positive regulation of beta-galactosidase activity / ganglioside GM1 transport to membrane / ganglioside GM2 binding / ganglioside GM3 binding / ganglioside GP1c binding / ganglioside GM1 binding / ganglioside GT1b binding / sphingolipid metabolic process / prostate gland growth / epithelial cell differentiation involved in prostate gland development ...positive regulation of beta-galactosidase activity / ganglioside GM1 transport to membrane / ganglioside GM2 binding / ganglioside GM3 binding / ganglioside GP1c binding / ganglioside GM1 binding / ganglioside GT1b binding / sphingolipid metabolic process / prostate gland growth / epithelial cell differentiation involved in prostate gland development / Glycosphingolipid catabolism / lysosomal transport / azurophil granule membrane / regulation of lipid metabolic process / enzyme activator activity / adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway / lysosomal lumen / Peptide ligand-binding receptors / regulation of autophagy / phospholipid binding / late endosome / Platelet degranulation / G alpha (i) signalling events / scaffold protein binding / protease binding / collagen-containing extracellular matrix / lysosome / lysosomal membrane / intracellular membrane-bounded organelle / Neutrophil degranulation / protein homodimerization activity / extracellular space / extracellular exosome / extracellular region / identical protein binding / plasma membrane Similarity search - Function |
Biological species | Homo sapiens (human) Glycine max (soybean) |
Citation | Date: 2018 Feb Title: Saposin Lipid Nanoparticles: A Highly Versatile and Modular Tool for Membrane Protein Research Authors: Flayhan A / Mertens H / Ural-Blimke Y / Martinez Molledo M / Svergun D |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDC37 |
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-Related structure data
Related structure data | C: citing same article (ref.) |
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Similar structure data |
-External links
Related items in Molecule of the Month |
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-Models
Model #1501 | Type: dummy / Software: (2.9.0) / Radius of dummy atoms: 1.80 A / Symmetry: P1 / Chi-square value: 4.835 Search similar-shape structures of this assembly by Omokage search (details) |
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-Sample
Sample | Name: Saposin nanoparticle (SapNP) SapA:SoyPI / Entity id: 779 / 781 |
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Buffer | Name: PBS / PK: 7 / pH: 7.4 |
Entity #779 | Name: sapA / Type: protein / Description: saposin-a / Formula weight: 9.084 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: P07602 Sequence: SMSLPCDICK DVVTAAGDML KDNATEEEIL VYLEKTCDWL PKPNMSASCK EIVDSYLPVI LDIIKGEMSR PGEVCSALNL CES |
Entity #781 | Name: soyPI / Type: other / Description: L-α-phosphatidylinositol (soy) / Formula weight: 0.866 / Source: Glycine max |
-Experimental information
Beam | Instrument name: PETRA III P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 3.1 mm | ||||||||||||||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 2M | ||||||||||||||||||||||||||||||||||||||||||
Scan | Title: sapAsoyPI / Measurement date: Dec 15, 2016 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 0.05 sec. / Number of frames: 20 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 1200 /
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Result | Type of curve: extrapolated
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