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- SASDBG9: ABC transporter periplasmic substrate-binding protein TupA measur... -

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Basic information

Entry
Database: SASBDB / ID: SASDBG9
SampleABC transporter periplasmic substrate-binding protein TupA measured in the presence of tungstate
  • ABC transporter periplasmic substrate-binding protein (protein), Desulfovibrio alaskensis (strain G20)
Function / homology: / PBP domain / PBP superfamily domain / ABC transporter periplasmic substrate-binding protein
Function and homology information
Biological speciesDesulfovibrio alaskensis (strain G20) (bacteria)
Contact author
  • Alejandro Panjkovich (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Models

Model #1121
Type: mix / Software: (2.7.2) / Radius of dummy atoms: 1.90 A
Comment: Tungstate group was added manually by homology to related structures
Chi-square value: 2.191
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: ABC transporter periplasmic substrate-binding protein TupA measured in the presence of tungstate
Specimen concentration: 0.80-12.00
BufferName: 5 mM Tris-HCl / pH: 7.6
Entity #584Type: protein
Description: ABC transporter periplasmic substrate-binding protein
Formula weight: 29.66 / Num. of mol.: 1 / Source: Desulfovibrio alaskensis (strain G20) / References: UniProt: Q316W1
Sequence: MAHHHHHHVD DDDKMLEVLF QGPEAPVLMM ATTTSTDNTG LLDDLAPQFT KDTGIELRWT AVGTGKALKM GENCDVDILL VHAPAAEKAF VDAGFGTART QLMYNDFVII GPAADPAGVK GMTVAAALGK IAADNAVFVS RGDNSGTHKM EKSLWKQIEG PSPEKEAWYV ...Sequence:
MAHHHHHHVD DDDKMLEVLF QGPEAPVLMM ATTTSTDNTG LLDDLAPQFT KDTGIELRWT AVGTGKALKM GENCDVDILL VHAPAAEKAF VDAGFGTART QLMYNDFVII GPAADPAGVK GMTVAAALGK IAADNAVFVS RGDNSGTHKM EKSLWKQIEG PSPEKEAWYV QTGQGMLRTI NVAAEKGGYT MTDRGTYIKY EASMDGNPPL KILVEGDKIL FNQYSAIPVN PAHCPKVKKD LADKFVNWMA SPATQKTIGD FKLMGKALFT PNAE

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.099 Å / Dist. spec. to detc.: 2.867 mm
DetectorName: Pilatus 1M
Scan
Title: TupA measured in the presence of tungstate / Measurement date: Jun 21, 2014 / Storage temperature: 4 °C / Cell temperature: 4.9 °C / Exposure time: 1 sec. / Number of frames: 10 / Unit: 1/A /
MinMax
Q0.0032 0.4967
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 705 /
MinMax
Q0.0164669 0.349913
P(R) point1 705
R0 89
Result
Type of curve: merged
Comments: TupA measured in the presence of tungstate, fitted against the holo-form model.
ExperimentalStandardStandard errorPorod
MW29.7 kDa29 kDa2 27 kDa
Volume---44.4 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I029.2 0.1 28.9 0.1
Radius of gyration, Rg2.38 nm0.02 2.28 nm0.03

MinMaxError
D-8.9 0.3
Guinier point29 114 -

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