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- SASDBZ9: Immunoglobulin domains 4,5,6,7 of Nucleoporin Pom152 (Pom152 Ig-4... -

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ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDBZ9
SampleImmunoglobulin domains 4,5,6,7 of Nucleoporin Pom152 (Pom152 Ig-4,5,6,7: amino acids 718-1148)
  • Nucleoporin POM152 (protein), Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Function / homology
Function and homology information


nuclear pore transmembrane ring / spindle pole body duplication / nuclear pore organization / structural constituent of nuclear pore / nucleocytoplasmic transport / nuclear envelope lumen / mRNA transport / nuclear pore / protein-membrane adaptor activity / nuclear periphery ...nuclear pore transmembrane ring / spindle pole body duplication / nuclear pore organization / structural constituent of nuclear pore / nucleocytoplasmic transport / nuclear envelope lumen / mRNA transport / nuclear pore / protein-membrane adaptor activity / nuclear periphery / cell periphery / protein import into nucleus / nuclear envelope / nuclear membrane / mitochondrion
Similarity search - Function
Nucleoporin Pom152 / : / : / : / : / : / Nucleoporin pom152-like, immunoglobulin-like domain / Nucleoporin POM152, N-terminal transmembrane domain / Nucleoporin POM152, Ig-like domain / Nucleoporin pom152-like, first immunoglobulin-like domain / Nucleoporin pom152-like, ninth immunoglobulin-like domain
Similarity search - Domain/homology
Biological speciesSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
CitationDate: 2017 Feb
Title: Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex
Authors: Upla P / Kim S / Sampathkumar P / Dutta K / Cahill S / Chemmama I / Williams R / Bonanno J / Rice W / Stokes D / Cowburn D / Almo S / Sali A / Rout M
Contact author
  • Seung Joong Kim (University of California, San Francisco (UCSF))

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #1112
Type: dummy / Software: DAMMIN / Radius of dummy atoms: 2.75 A / Chi-square value: 1.942
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Immunoglobulin domains 4,5,6,7 of Nucleoporin Pom152 (Pom152 Ig-4,5,6,7: amino acids 718-1148)
Specimen concentration: 0.50-10.00
BufferName: 10mM HEPES, 150mM NaCl, 10%(v/v) glycerol, 5mM DTT / pH: 7.5
Entity #579Type: protein / Description: Nucleoporin POM152 / Formula weight: 49.038 / Num. of mol.: 1
Source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
References: UniProt: P39685
Sequence: RVKPSASLKL HHDLKLCLGD HSSVPVALKG QGPFTLTYDI IETFSSKRKT FEIKEIKTNE YVIKTPVFTT GGDYILSLVS IKDSTGCVVG LSQPDAKIQV RRDIPSAAFN FFEPIKEAKI KHGSVTEIPL KLSGEGPFTV KFKHMDYDGN IVKEFENKFQ NSYKPALKVS ...Sequence:
RVKPSASLKL HHDLKLCLGD HSSVPVALKG QGPFTLTYDI IETFSSKRKT FEIKEIKTNE YVIKTPVFTT GGDYILSLVS IKDSTGCVVG LSQPDAKIQV RRDIPSAAFN FFEPIKEAKI KHGSVTEIPL KLSGEGPFTV KFKHMDYDGN IVKEFENKFQ NSYKPALKVS KEGLYQLVDI RDSSCQGNVI YRNSLYKVSF LEKPKFAIQD NHHITKVTEN LFSKEEVCQG MEGTVDLALF GSPPFILEYD LMAPNGHIST KKIQVATKYA SLKLPNQIPG EYITTIKAIF DGNYGESDIH FREHQSELII KQTVHPIPDV AFADGGKTLR ACAANVDQIS FLEPINLKFL QGESPFSITF SVYHESTSRT DQYTIDNIDS ENFSFEKLYE GMKLGNHAIT IDSVVDANGC VNSLISGPRN QILVSITDAP KEGHHHHHH

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Experimental information

BeamInstrument name: Stanford Synchrotron Radiation Lightsource (SSRL) BL4-2
City: Stanford, CA / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.098 Å / Dist. spec. to detc.: 1.7 mm
DetectorName: Rayonix MX225-HE
Scan
Title: Immunoglobulin domains 4,5,6,7 of Nucleoporin Pom152 (Pom152 Ig-4,5,6,7: amino acids 718-1148)
Measurement date: Apr 12, 2015 / Storage temperature: 15 °C / Cell temperature: 15 °C / Exposure time: 1 sec. / Number of frames: 20 / Unit: 1/A /
MinMax
Q0.0142 0.2693
Distance distribution function P(R)
Sofotware P(R): GNOM 4.5a / Number of points: 283 /
MinMax
Q0.01419 0.272
P(R) point1 283
R0 154.3
Result
Type of curve: merged
Comments: Guinier Rg and I(0) were calculated using AutoRg. The experimental MW was estimated using SAXSMOW.
ExperimentalStandardPorod
MW49.4 kDa48.3 kDa-
Volume--66.59 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I0822.8 2.156 815.33 4.4
Radius of gyration, Rg4.629 nm0.011 4.34 nm0.17

MinMax
D-15.43
Guinier point2 18

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