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- PDB-9zb8: Crystal Structure of Human GGPPS Bound to Selective Inhibitor CML... -

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Basic information

Entry
Database: PDB / ID: 9zb8
TitleCrystal Structure of Human GGPPS Bound to Selective Inhibitor CML-07-119
ComponentsGeranylgeranyl pyrophosphate synthase
KeywordsTRANSFERASE/INHIBITOR / Inhibitor / complex / isoprenoid / synthesis / TRANSFERASE / TRANSFERASE-INHIBITOR complex
Function / homology
Function and homology information


isoprenoid metabolic process / geranylgeranyl diphosphate synthase / geranyl diphosphate biosynthetic process / dimethylallyltranstransferase / Transferases; Transferring alkyl or aryl groups, other than methyl groups / (2E,6E)-farnesyl diphosphate synthase / Lanosterol biosynthesis / geranylgeranyl diphosphate biosynthetic process / geranylgeranyl diphosphate synthase activity / isoprenoid biosynthetic process ...isoprenoid metabolic process / geranylgeranyl diphosphate synthase / geranyl diphosphate biosynthetic process / dimethylallyltranstransferase / Transferases; Transferring alkyl or aryl groups, other than methyl groups / (2E,6E)-farnesyl diphosphate synthase / Lanosterol biosynthesis / geranylgeranyl diphosphate biosynthetic process / geranylgeranyl diphosphate synthase activity / isoprenoid biosynthetic process / trans, trans-farnesyl diphosphate biosynthetic process / dimethylallyltranstransferase activity / (2E,6E)-farnesyl diphosphate synthase activity / Activation of gene expression by SREBF (SREBP) / Z disc / perinuclear region of cytoplasm / metal ion binding / identical protein binding / cytosol / cytoplasm
Similarity search - Function
Polyprenyl synthases signature 1. / Polyprenyl synthases signature 2. / Polyprenyl synthetase, conserved site / Polyprenyl synthetase / Polyprenyl synthetase / Isoprenoid synthase domain superfamily
Similarity search - Domain/homology
: / Geranylgeranyl pyrophosphate synthase
Similarity search - Component
Biological speciesHomo sapiens (human)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.641 Å
AuthorsFerens, F.G. / Tsantrizos, Y.S. / Lemieux, M.J.
Funding support Canada, 2items
OrganizationGrant numberCountry
Natural Sciences and Engineering Research Council (NSERC, Canada)RGPIN-2023-04396 Canada
Canadian Institutes of Health Research (CIHR)PJT-159743 Canada
CitationJournal: To Be Published
Title: Crystal Structure of Human GGPPS Bound to Selective Inhibitor CML-07-119
Authors: Ferens, F.G. / Tsantrizos, Y.S. / Lemieux, M.J.
History
DepositionNov 20, 2025Deposition site: RCSB / Processing site: RCSB
Revision 1.0Sep 9, 2026Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: Geranylgeranyl pyrophosphate synthase
B: Geranylgeranyl pyrophosphate synthase
C: Geranylgeranyl pyrophosphate synthase
D: Geranylgeranyl pyrophosphate synthase
E: Geranylgeranyl pyrophosphate synthase
F: Geranylgeranyl pyrophosphate synthase
G: Geranylgeranyl pyrophosphate synthase
H: Geranylgeranyl pyrophosphate synthase
I: Geranylgeranyl pyrophosphate synthase
J: Geranylgeranyl pyrophosphate synthase
K: Geranylgeranyl pyrophosphate synthase
L: Geranylgeranyl pyrophosphate synthase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)427,37060
Polymers419,67512
Non-polymers7,69648
Water1,63991
1
A: Geranylgeranyl pyrophosphate synthase
B: Geranylgeranyl pyrophosphate synthase
C: Geranylgeranyl pyrophosphate synthase
D: Geranylgeranyl pyrophosphate synthase
E: Geranylgeranyl pyrophosphate synthase
F: Geranylgeranyl pyrophosphate synthase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)213,68530
Polymers209,8376
Non-polymers3,84824
Water1086
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
G: Geranylgeranyl pyrophosphate synthase
H: Geranylgeranyl pyrophosphate synthase
I: Geranylgeranyl pyrophosphate synthase
J: Geranylgeranyl pyrophosphate synthase
K: Geranylgeranyl pyrophosphate synthase
L: Geranylgeranyl pyrophosphate synthase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)213,68530
Polymers209,8376
Non-polymers3,84824
Water1086
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)84.413, 116.167, 214.406
Angle α, β, γ (deg.)90, 99.272, 90
Int Tables number4
Space group name H-MP1211
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails (eV)
11A
21B
32A
42C
53A
63D
74A
84E
95A
105F
116A
126G
137A
147H
158A
168I
179A
189J
1910A
2010K
2111A
2211L
2312B
2412C
2513B
2613D
2714B
2814E
2915B
3015F
3116B
3216G
3317B
3417H
3518B
3618I
3719B
3819J
3920B
4020K
4121B
4221L
4322C
4422D
4523C
4623E
4724C
4824F
4925C
5025G
5126C
5226H
5327C
5427I
5528C
5628J
5729C
5829K
5930C
6030L
6131D
6231E
6332D
6432F
6533D
6633G
6734D
6834H
6935D
7035I
7136D
7236J
7337D
7437K
7538D
7638L
7739E
7839F
7940E
8040G
8141E
8241H
8342E
8442I
8543E
8643J
8744E
8844K
8945E
9045L
9146F
9246G
9347F
9447H
9548F
9648I
9749F
9849J
9950F
10050K
10151F
10251L
10352G
10452H
10553G
10653I
10754G
10854J
10955G
11055K
11156G
11256L
11357H
11457I
11558H
11658J
11759H
11859K
11960H
12060L
12161I
12261J
12362I
12462K
12563I
12663L
12764J
12864K
12965J
13065L
13166K
13266L

NCS domain segments:
Dom-IDComponent-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
111METMETGLUGLUAA1 - 2972 - 298
211METMETGLUGLUBB1 - 2972 - 298
322METMETLYSLYSAA1 - 2962 - 297
422METMETLYSLYSCC1 - 2962 - 297
533LYSLYSGLUGLUAA3 - 2974 - 298
633LYSLYSGLUGLUDD3 - 2974 - 298
744THRTHRGLUGLUAA4 - 2975 - 298
844THRTHRGLUGLUEE4 - 2975 - 298
955METMETLYSLYSAA1 - 2962 - 297
1055METMETLYSLYSFF1 - 2962 - 297
1166METMETGLUGLUAA1 - 2972 - 298
1266METMETGLUGLUGG1 - 2972 - 298
1377METMETGLUGLUAA1 - 2972 - 298
1477METMETGLUGLUHH1 - 2972 - 298
1588METMETLYSLYSAA1 - 2962 - 297
1688METMETLYSLYSII1 - 2962 - 297
1799THRTHRGLUGLUAA4 - 2975 - 298
1899THRTHRGLUGLUJJ4 - 2975 - 298
191010THRTHRGLUGLUAA4 - 2975 - 298
201010THRTHRGLUGLUKK4 - 2975 - 298
211111METMETLYSLYSAA1 - 2962 - 297
221111METMETLYSLYSLL1 - 2962 - 297
231212METMETLYSLYSBB1 - 2962 - 297
241212METMETLYSLYSCC1 - 2962 - 297
251313LYSLYSGLUGLUBB3 - 2974 - 298
261313LYSLYSGLUGLUDD3 - 2974 - 298
271414THRTHRGLUGLUBB4 - 2975 - 298
281414THRTHRGLUGLUEE4 - 2975 - 298
291515METMETLYSLYSBB1 - 2962 - 297
301515METMETLYSLYSFF1 - 2962 - 297
311616METMETGLUGLUBB1 - 2972 - 298
321616METMETGLUGLUGG1 - 2972 - 298
331717METMETGLUGLUBB1 - 2972 - 298
341717METMETGLUGLUHH1 - 2972 - 298
351818METMETLYSLYSBB1 - 2962 - 297
361818METMETLYSLYSII1 - 2962 - 297
371919THRTHRGLUGLUBB4 - 2975 - 298
381919THRTHRGLUGLUJJ4 - 2975 - 298
392020THRTHRGLUGLUBB4 - 2975 - 298
402020THRTHRGLUGLUKK4 - 2975 - 298
412121METMETLYSLYSBB1 - 2962 - 297
422121METMETLYSLYSLL1 - 2962 - 297
432222LYSLYSLYSLYSCC3 - 2964 - 297
442222LYSLYSLYSLYSDD3 - 2964 - 297
452323THRTHRPHEPHECC4 - 2955 - 296
462323THRTHRPHEPHEEE4 - 2955 - 296
472424METMETLYSLYSCC1 - 2962 - 297
482424METMETLYSLYSFF1 - 2962 - 297
492525METMETLYSLYSCC1 - 2962 - 297
502525METMETLYSLYSGG1 - 2962 - 297
512626METMETLYSLYSCC1 - 2962 - 297
522626METMETLYSLYSHH1 - 2962 - 297
532727METMETLYSLYSCC1 - 2962 - 297
542727METMETLYSLYSII1 - 2962 - 297
552828THRTHRPHEPHECC4 - 2955 - 296
562828THRTHRPHEPHEJJ4 - 2955 - 296
572929THRTHRPHEPHECC4 - 2955 - 296
582929THRTHRPHEPHEKK4 - 2955 - 296
593030METMETLYSLYSCC1 - 2962 - 297
603030METMETLYSLYSLL1 - 2962 - 297
613131THRTHRLYSLYSDD4 - 2965 - 297
623131THRTHRLYSLYSEE4 - 2965 - 297
633232LYSLYSLYSLYSDD3 - 2964 - 297
643232LYSLYSLYSLYSFF3 - 2964 - 297
653333LYSLYSGLUGLUDD3 - 2974 - 298
663333LYSLYSGLUGLUGG3 - 2974 - 298
673434LYSLYSGLUGLUDD3 - 2974 - 298
683434LYSLYSGLUGLUHH3 - 2974 - 298
693535LYSLYSLYSLYSDD3 - 2964 - 297
703535LYSLYSLYSLYSII3 - 2964 - 297
713636THRTHRLYSLYSDD4 - 2965 - 297
723636THRTHRLYSLYSJJ4 - 2965 - 297
733737THRTHRGLUGLUDD4 - 2975 - 298
743737THRTHRGLUGLUKK4 - 2975 - 298
753838LYSLYSLYSLYSDD3 - 2964 - 297
763838LYSLYSLYSLYSLL3 - 2964 - 297
773939THRTHRPHEPHEEE4 - 2955 - 296
783939THRTHRPHEPHEFF4 - 2955 - 296
794040THRTHRGLUGLUEE4 - 2975 - 298
804040THRTHRGLUGLUGG4 - 2975 - 298
814141THRTHRGLUGLUEE4 - 2975 - 298
824141THRTHRGLUGLUHH4 - 2975 - 298
834242THRTHRPHEPHEEE4 - 2955 - 296
844242THRTHRPHEPHEII4 - 2955 - 296
854343THRTHRGLUGLUEE4 - 2975 - 298
864343THRTHRGLUGLUJJ4 - 2975 - 298
874444THRTHRGLUGLUEE4 - 2975 - 298
884444THRTHRGLUGLUKK4 - 2975 - 298
894545THRTHRPHEPHEEE4 - 2955 - 296
904545THRTHRPHEPHELL4 - 2955 - 296
914646METMETLYSLYSFF1 - 2962 - 297
924646METMETLYSLYSGG1 - 2962 - 297
934747METMETLYSLYSFF1 - 2962 - 297
944747METMETLYSLYSHH1 - 2962 - 297
954848METMETLYSLYSFF1 - 2962 - 297
964848METMETLYSLYSII1 - 2962 - 297
974949THRTHRPHEPHEFF4 - 2955 - 296
984949THRTHRPHEPHEJJ4 - 2955 - 296
995050THRTHRPHEPHEFF4 - 2955 - 296
1005050THRTHRPHEPHEKK4 - 2955 - 296
1015151METMETLYSLYSFF1 - 2962 - 297
1025151METMETLYSLYSLL1 - 2962 - 297
1035252METMETGLUGLUGG1 - 2972 - 298
1045252METMETGLUGLUHH1 - 2972 - 298
1055353METMETLYSLYSGG1 - 2962 - 297
1065353METMETLYSLYSII1 - 2962 - 297
1075454THRTHRGLUGLUGG4 - 2975 - 298
1085454THRTHRGLUGLUJJ4 - 2975 - 298
1095555THRTHRGLUGLUGG4 - 2975 - 298
1105555THRTHRGLUGLUKK4 - 2975 - 298
1115656METMETLYSLYSGG1 - 2962 - 297
1125656METMETLYSLYSLL1 - 2962 - 297
1135757METMETLYSLYSHH1 - 2962 - 297
1145757METMETLYSLYSII1 - 2962 - 297
1155858THRTHRGLUGLUHH4 - 2975 - 298
1165858THRTHRGLUGLUJJ4 - 2975 - 298
1175959THRTHRGLUGLUHH4 - 2975 - 298
1185959THRTHRGLUGLUKK4 - 2975 - 298
1196060METMETLYSLYSHH1 - 2962 - 297
1206060METMETLYSLYSLL1 - 2962 - 297
1216161THRTHRPHEPHEII4 - 2955 - 296
1226161THRTHRPHEPHEJJ4 - 2955 - 296
1236262THRTHRPHEPHEII4 - 2955 - 296
1246262THRTHRPHEPHEKK4 - 2955 - 296
1256363METMETLYSLYSII1 - 2962 - 297
1266363METMETLYSLYSLL1 - 2962 - 297
1276464THRTHRGLUGLUJJ4 - 2975 - 298
1286464THRTHRGLUGLUKK4 - 2975 - 298
1296565THRTHRPHEPHEJJ4 - 2955 - 296
1306565THRTHRPHEPHELL4 - 2955 - 296
1316666THRTHRPHEPHEKK4 - 2955 - 296
1326666THRTHRPHEPHELL4 - 2955 - 296

NCS ensembles :
IDDetails (eV)
1Local NCS retraints between domains: 1 2
2Local NCS retraints between domains: 3 4
3Local NCS retraints between domains: 5 6
4Local NCS retraints between domains: 7 8
5Local NCS retraints between domains: 9 10
6Local NCS retraints between domains: 11 12
7Local NCS retraints between domains: 13 14
8Local NCS retraints between domains: 15 16
9Local NCS retraints between domains: 17 18
10Local NCS retraints between domains: 19 20
11Local NCS retraints between domains: 21 22
12Local NCS retraints between domains: 23 24
13Local NCS retraints between domains: 25 26
14Local NCS retraints between domains: 27 28
15Local NCS retraints between domains: 29 30
16Local NCS retraints between domains: 31 32
17Local NCS retraints between domains: 33 34
18Local NCS retraints between domains: 35 36
19Local NCS retraints between domains: 37 38
20Local NCS retraints between domains: 39 40
21Local NCS retraints between domains: 41 42
22Local NCS retraints between domains: 43 44
23Local NCS retraints between domains: 45 46
24Local NCS retraints between domains: 47 48
25Local NCS retraints between domains: 49 50
26Local NCS retraints between domains: 51 52
27Local NCS retraints between domains: 53 54
28Local NCS retraints between domains: 55 56
29Local NCS retraints between domains: 57 58
30Local NCS retraints between domains: 59 60
31Local NCS retraints between domains: 61 62
32Local NCS retraints between domains: 63 64
33Local NCS retraints between domains: 65 66
34Local NCS retraints between domains: 67 68
35Local NCS retraints between domains: 69 70
36Local NCS retraints between domains: 71 72
37Local NCS retraints between domains: 73 74
38Local NCS retraints between domains: 75 76
39Local NCS retraints between domains: 77 78
40Local NCS retraints between domains: 79 80
41Local NCS retraints between domains: 81 82
42Local NCS retraints between domains: 83 84
43Local NCS retraints between domains: 85 86
44Local NCS retraints between domains: 87 88
45Local NCS retraints between domains: 89 90
46Local NCS retraints between domains: 91 92
47Local NCS retraints between domains: 93 94
48Local NCS retraints between domains: 95 96
49Local NCS retraints between domains: 97 98
50Local NCS retraints between domains: 99 100
51Local NCS retraints between domains: 101 102
52Local NCS retraints between domains: 103 104
53Local NCS retraints between domains: 105 106
54Local NCS retraints between domains: 107 108
55Local NCS retraints between domains: 109 110
56Local NCS retraints between domains: 111 112
57Local NCS retraints between domains: 113 114
58Local NCS retraints between domains: 115 116
59Local NCS retraints between domains: 117 118
60Local NCS retraints between domains: 119 120
61Local NCS retraints between domains: 121 122
62Local NCS retraints between domains: 123 124
63Local NCS retraints between domains: 125 126
64Local NCS retraints between domains: 127 128
65Local NCS retraints between domains: 129 130
66Local NCS retraints between domains: 131 132

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Components

#1: Protein
Geranylgeranyl pyrophosphate synthase / GGPP synthase / GGPPSase / (2E / 6E)-farnesyl diphosphate synthase / Dimethylallyltranstransferase ...GGPP synthase / GGPPSase / (2E / 6E)-farnesyl diphosphate synthase / Dimethylallyltranstransferase / Farnesyl diphosphate synthase / Farnesyltranstransferase / Geranylgeranyl diphosphate synthase / Geranyltranstransferase


Mass: 34972.883 Da / Num. of mol.: 12
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: GGPS1 / Production host: Escherichia coli (E. coli)
References: UniProt: O95749, Transferases; Transferring alkyl or aryl groups, other than methyl groups, dimethylallyltranstransferase, geranylgeranyl diphosphate synthase, (2E,6E)-farnesyl diphosphate synthase
#2: Chemical
ChemComp-A1C1E / {[(2-{3-[(3-fluoro-4-methoxyphenyl)carbamoyl]phenyl}thieno[2,3-d]pyrimidin-4-yl)amino]methylene}bis(phosphonic acid)


Mass: 568.408 Da / Num. of mol.: 12 / Source method: obtained synthetically / Formula: C21H19FN4O8P2S / Feature type: SUBJECT OF INVESTIGATION
#3: Chemical...
ChemComp-MG / MAGNESIUM ION


Mass: 24.305 Da / Num. of mol.: 36 / Source method: obtained synthetically / Formula: Mg / Feature type: SUBJECT OF INVESTIGATION
#4: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 91 / Source method: isolated from a natural source / Formula: H2O
Has ligand of interestY
Has protein modificationN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.48 Å3/Da / Density % sol: 50.42 %
Crystal growTemperature: 293.15 K / Method: vapor diffusion, hanging drop / pH: 8
Details: 100 mM Tris-HCl pH 8.0, 42% 2-Methyl-2,4-pentanediol

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: SSRL / Beamline: BL12-1 / Wavelength: 0.97946 Å
DetectorType: DECTRIS EIGER2 XE 16M / Detector: PIXEL / Date: Mar 24, 2024 / Details: Microfocus
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97946 Å / Relative weight: 1
ReflectionResolution: 2.64→106.03 Å / Num. obs: 54508 / % possible obs: 45.6 % / Redundancy: 6.9 % / Biso Wilson estimate: 32.88 Å2 / CC1/2: 0.996 / Rmerge(I) obs: 0.167 / Rpim(I) all: 0.067 / Rrim(I) all: 0.18 / Net I/σ(I): 4.3
Reflection shellResolution: 2.64→3.26 Å / Redundancy: 6.5 % / Rmerge(I) obs: 0.483 / Mean I/σ(I) obs: 1.6 / Num. unique obs: 5073 / CC1/2: 0.809 / Rpim(I) all: 0.202 / Rrim(I) all: 0.524 / % possible all: 9.1

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Processing

Software
NameVersionClassification
REFMAC5.8.0430 (refmacat 0.4.105)refinement
DIALSdata reduction
STARANISOdata scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.641→106.027 Å / Cor.coef. Fo:Fc: 0.909 / Cor.coef. Fo:Fc free: 0.865 / SU B: 41.568 / SU ML: 0.402 / Cross valid method: FREE R-VALUE / ESU R Free: 0.647
Details: Hydrogens have been used if present in the input file
RfactorNum. reflection% reflection
Rfree0.2473 2757 5.058 %
Rwork0.2088 51748 -
all0.211 --
obs-54505 45.448 %
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK BULK SOLVENT
Displacement parametersBiso mean: 54.025 Å2
Baniso -1Baniso -2Baniso -3
1-0.601 Å2-0 Å21.08 Å2
2---2.576 Å2-0 Å2
3---1.54 Å2
Refinement stepCycle: LAST / Resolution: 2.641→106.027 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms28451 0 480 91 29022
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0080.01229654
X-RAY DIFFRACTIONr_bond_other_d0.0010.01628108
X-RAY DIFFRACTIONr_angle_refined_deg1.611.86840014
X-RAY DIFFRACTIONr_angle_other_deg0.5221.77864779
X-RAY DIFFRACTIONr_dihedral_angle_1_deg5.50353455
X-RAY DIFFRACTIONr_dihedral_angle_2_deg10.7915144
X-RAY DIFFRACTIONr_dihedral_angle_3_deg16.702105363
X-RAY DIFFRACTIONr_dihedral_angle_6_deg14.108101418
X-RAY DIFFRACTIONr_chiral_restr0.0670.24364
X-RAY DIFFRACTIONr_gen_planes_refined0.0060.0233899
X-RAY DIFFRACTIONr_gen_planes_other0.0010.026733
X-RAY DIFFRACTIONr_nbd_refined0.2430.27454
X-RAY DIFFRACTIONr_symmetry_nbd_other0.1890.225651
X-RAY DIFFRACTIONr_nbtor_refined0.1970.214773
X-RAY DIFFRACTIONr_symmetry_nbtor_other0.0770.216392
X-RAY DIFFRACTIONr_xyhbond_nbd_refined0.220.2455
X-RAY DIFFRACTIONr_symmetry_xyhbond_nbd_other0.1520.28
X-RAY DIFFRACTIONr_metal_ion_refined0.1190.24
X-RAY DIFFRACTIONr_symmetry_nbd_refined0.3860.232
X-RAY DIFFRACTIONr_nbd_other0.2740.253
X-RAY DIFFRACTIONr_mcbond_it1.6141.88613883
X-RAY DIFFRACTIONr_mcbond_other1.6141.88613883
X-RAY DIFFRACTIONr_mcangle_it2.7943.37417317
X-RAY DIFFRACTIONr_mcangle_other2.7943.37417318
X-RAY DIFFRACTIONr_scbond_it1.9462.09915771
X-RAY DIFFRACTIONr_scbond_other1.9462.09915771
X-RAY DIFFRACTIONr_scangle_it3.3463.76422697
X-RAY DIFFRACTIONr_scangle_other3.3463.76422698
X-RAY DIFFRACTIONr_lrange_it5.52518.26634805
X-RAY DIFFRACTIONr_lrange_other5.52518.26634802
X-RAY DIFFRACTIONr_ncsr_local_group_10.0650.0510258
X-RAY DIFFRACTIONr_ncsr_local_group_20.0680.059949
X-RAY DIFFRACTIONr_ncsr_local_group_30.0580.0510057
X-RAY DIFFRACTIONr_ncsr_local_group_40.0560.0510044
X-RAY DIFFRACTIONr_ncsr_local_group_50.0620.0510031
X-RAY DIFFRACTIONr_ncsr_local_group_60.0570.0510401
X-RAY DIFFRACTIONr_ncsr_local_group_70.0650.0510344
X-RAY DIFFRACTIONr_ncsr_local_group_80.0530.0510026
X-RAY DIFFRACTIONr_ncsr_local_group_90.0560.0510014
X-RAY DIFFRACTIONr_ncsr_local_group_100.0540.0510014
X-RAY DIFFRACTIONr_ncsr_local_group_110.0820.059725
X-RAY DIFFRACTIONr_ncsr_local_group_120.0770.059934
X-RAY DIFFRACTIONr_ncsr_local_group_130.0620.0510088
X-RAY DIFFRACTIONr_ncsr_local_group_140.0610.0510058
X-RAY DIFFRACTIONr_ncsr_local_group_150.0660.0510006
X-RAY DIFFRACTIONr_ncsr_local_group_160.0620.0510259
X-RAY DIFFRACTIONr_ncsr_local_group_170.0620.0510286
X-RAY DIFFRACTIONr_ncsr_local_group_180.0660.059998
X-RAY DIFFRACTIONr_ncsr_local_group_190.0640.0510036
X-RAY DIFFRACTIONr_ncsr_local_group_200.0570.0510030
X-RAY DIFFRACTIONr_ncsr_local_group_210.090.059712
X-RAY DIFFRACTIONr_ncsr_local_group_220.0730.059867
X-RAY DIFFRACTIONr_ncsr_local_group_230.0730.059801
X-RAY DIFFRACTIONr_ncsr_local_group_240.0740.059966
X-RAY DIFFRACTIONr_ncsr_local_group_250.0680.059937
X-RAY DIFFRACTIONr_ncsr_local_group_260.0710.059947
X-RAY DIFFRACTIONr_ncsr_local_group_270.0680.0510005
X-RAY DIFFRACTIONr_ncsr_local_group_280.0720.059775
X-RAY DIFFRACTIONr_ncsr_local_group_290.070.059770
X-RAY DIFFRACTIONr_ncsr_local_group_300.0910.059716
X-RAY DIFFRACTIONr_ncsr_local_group_310.0540.0510124
X-RAY DIFFRACTIONr_ncsr_local_group_320.0590.059956
X-RAY DIFFRACTIONr_ncsr_local_group_330.0610.0510051
X-RAY DIFFRACTIONr_ncsr_local_group_340.0570.0510070
X-RAY DIFFRACTIONr_ncsr_local_group_350.0580.059956
X-RAY DIFFRACTIONr_ncsr_local_group_360.0460.0510155
X-RAY DIFFRACTIONr_ncsr_local_group_370.0490.0510097
X-RAY DIFFRACTIONr_ncsr_local_group_380.0850.059653
X-RAY DIFFRACTIONr_ncsr_local_group_390.0570.059879
X-RAY DIFFRACTIONr_ncsr_local_group_400.0570.0510022
X-RAY DIFFRACTIONr_ncsr_local_group_410.0570.0510059
X-RAY DIFFRACTIONr_ncsr_local_group_420.0590.059879
X-RAY DIFFRACTIONr_ncsr_local_group_430.0590.0510113
X-RAY DIFFRACTIONr_ncsr_local_group_440.0450.0510134
X-RAY DIFFRACTIONr_ncsr_local_group_450.0840.059575
X-RAY DIFFRACTIONr_ncsr_local_group_460.0590.0510016
X-RAY DIFFRACTIONr_ncsr_local_group_470.0610.0510006
X-RAY DIFFRACTIONr_ncsr_local_group_480.0540.0510073
X-RAY DIFFRACTIONr_ncsr_local_group_490.060.059866
X-RAY DIFFRACTIONr_ncsr_local_group_500.0510.059862
X-RAY DIFFRACTIONr_ncsr_local_group_510.0750.059819
X-RAY DIFFRACTIONr_ncsr_local_group_520.0590.0510364
X-RAY DIFFRACTIONr_ncsr_local_group_530.0550.0510002
X-RAY DIFFRACTIONr_ncsr_local_group_540.0580.0510006
X-RAY DIFFRACTIONr_ncsr_local_group_550.0510.0510015
X-RAY DIFFRACTIONr_ncsr_local_group_560.0820.059748
X-RAY DIFFRACTIONr_ncsr_local_group_570.0560.059999
X-RAY DIFFRACTIONr_ncsr_local_group_580.0550.0510020
X-RAY DIFFRACTIONr_ncsr_local_group_590.050.0510022
X-RAY DIFFRACTIONr_ncsr_local_group_600.0850.059717
X-RAY DIFFRACTIONr_ncsr_local_group_610.0550.059870
X-RAY DIFFRACTIONr_ncsr_local_group_620.0570.059865
X-RAY DIFFRACTIONr_ncsr_local_group_630.0830.059757
X-RAY DIFFRACTIONr_ncsr_local_group_640.0520.0510104
X-RAY DIFFRACTIONr_ncsr_local_group_650.0840.059566
X-RAY DIFFRACTIONr_ncsr_local_group_660.0820.059568
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDTypeRms dev position (Å)Weight position
11AX-RAY DIFFRACTIONLocal ncs0.064890.0501
12BX-RAY DIFFRACTIONLocal ncs0.064890.0501
23AX-RAY DIFFRACTIONLocal ncs0.067950.0501
24CX-RAY DIFFRACTIONLocal ncs0.067950.0501
35AX-RAY DIFFRACTIONLocal ncs0.057910.0501
36DX-RAY DIFFRACTIONLocal ncs0.057910.0501
47AX-RAY DIFFRACTIONLocal ncs0.056350.0501
48EX-RAY DIFFRACTIONLocal ncs0.056350.0501
59AX-RAY DIFFRACTIONLocal ncs0.062060.0501
510FX-RAY DIFFRACTIONLocal ncs0.062060.0501
611AX-RAY DIFFRACTIONLocal ncs0.056650.0501
612GX-RAY DIFFRACTIONLocal ncs0.056650.0501
713AX-RAY DIFFRACTIONLocal ncs0.065120.0501
714HX-RAY DIFFRACTIONLocal ncs0.065120.0501
815AX-RAY DIFFRACTIONLocal ncs0.053290.0501
816IX-RAY DIFFRACTIONLocal ncs0.053290.0501
917AX-RAY DIFFRACTIONLocal ncs0.055920.0501
918JX-RAY DIFFRACTIONLocal ncs0.055920.0501
1019AX-RAY DIFFRACTIONLocal ncs0.054020.0501
1020KX-RAY DIFFRACTIONLocal ncs0.054020.0501
1121AX-RAY DIFFRACTIONLocal ncs0.08240.05009
1122LX-RAY DIFFRACTIONLocal ncs0.08240.05009
1223BX-RAY DIFFRACTIONLocal ncs0.077050.05009
1224CX-RAY DIFFRACTIONLocal ncs0.077050.05009
1325BX-RAY DIFFRACTIONLocal ncs0.062440.0501
1326DX-RAY DIFFRACTIONLocal ncs0.062440.0501
1427BX-RAY DIFFRACTIONLocal ncs0.060550.0501
1428EX-RAY DIFFRACTIONLocal ncs0.060550.0501
1529BX-RAY DIFFRACTIONLocal ncs0.066040.0501
1530FX-RAY DIFFRACTIONLocal ncs0.066040.0501
1631BX-RAY DIFFRACTIONLocal ncs0.0620.0501
1632GX-RAY DIFFRACTIONLocal ncs0.0620.0501
1733BX-RAY DIFFRACTIONLocal ncs0.062340.0501
1734HX-RAY DIFFRACTIONLocal ncs0.062340.0501
1835BX-RAY DIFFRACTIONLocal ncs0.065610.0501
1836IX-RAY DIFFRACTIONLocal ncs0.065610.0501
1937BX-RAY DIFFRACTIONLocal ncs0.064130.0501
1938JX-RAY DIFFRACTIONLocal ncs0.064130.0501
2039BX-RAY DIFFRACTIONLocal ncs0.057440.0501
2040KX-RAY DIFFRACTIONLocal ncs0.057440.0501
2141BX-RAY DIFFRACTIONLocal ncs0.08950.05009
2142LX-RAY DIFFRACTIONLocal ncs0.08950.05009
2243CX-RAY DIFFRACTIONLocal ncs0.072580.0501
2244DX-RAY DIFFRACTIONLocal ncs0.072580.0501
2345CX-RAY DIFFRACTIONLocal ncs0.073440.05009
2346EX-RAY DIFFRACTIONLocal ncs0.073440.05009
2447CX-RAY DIFFRACTIONLocal ncs0.073570.0501
2448FX-RAY DIFFRACTIONLocal ncs0.073570.0501
2549CX-RAY DIFFRACTIONLocal ncs0.067950.0501
2550GX-RAY DIFFRACTIONLocal ncs0.067950.0501
2651CX-RAY DIFFRACTIONLocal ncs0.071050.05009
2652HX-RAY DIFFRACTIONLocal ncs0.071050.05009
2753CX-RAY DIFFRACTIONLocal ncs0.068470.0501
2754IX-RAY DIFFRACTIONLocal ncs0.068470.0501
2855CX-RAY DIFFRACTIONLocal ncs0.071650.0501
2856JX-RAY DIFFRACTIONLocal ncs0.071650.0501
2957CX-RAY DIFFRACTIONLocal ncs0.069930.0501
2958KX-RAY DIFFRACTIONLocal ncs0.069930.0501
3059CX-RAY DIFFRACTIONLocal ncs0.091360.05009
3060LX-RAY DIFFRACTIONLocal ncs0.091360.05009
3161DX-RAY DIFFRACTIONLocal ncs0.053880.0501
3162EX-RAY DIFFRACTIONLocal ncs0.053880.0501
3263DX-RAY DIFFRACTIONLocal ncs0.058760.0501
3264FX-RAY DIFFRACTIONLocal ncs0.058760.0501
3365DX-RAY DIFFRACTIONLocal ncs0.060960.0501
3366GX-RAY DIFFRACTIONLocal ncs0.060960.0501
3467DX-RAY DIFFRACTIONLocal ncs0.056960.0501
3468HX-RAY DIFFRACTIONLocal ncs0.056960.0501
3569DX-RAY DIFFRACTIONLocal ncs0.058350.0501
3570IX-RAY DIFFRACTIONLocal ncs0.058350.0501
3671DX-RAY DIFFRACTIONLocal ncs0.04620.0501
3672JX-RAY DIFFRACTIONLocal ncs0.04620.0501
3773DX-RAY DIFFRACTIONLocal ncs0.048570.0501
3774KX-RAY DIFFRACTIONLocal ncs0.048570.0501
3875DX-RAY DIFFRACTIONLocal ncs0.085470.05009
3876LX-RAY DIFFRACTIONLocal ncs0.085470.05009
3977EX-RAY DIFFRACTIONLocal ncs0.05730.0501
3978FX-RAY DIFFRACTIONLocal ncs0.05730.0501
4079EX-RAY DIFFRACTIONLocal ncs0.057360.0501
4080GX-RAY DIFFRACTIONLocal ncs0.057360.0501
4181EX-RAY DIFFRACTIONLocal ncs0.05730.0501
4182HX-RAY DIFFRACTIONLocal ncs0.05730.0501
4283EX-RAY DIFFRACTIONLocal ncs0.059330.0501
4284IX-RAY DIFFRACTIONLocal ncs0.059330.0501
4385EX-RAY DIFFRACTIONLocal ncs0.059380.0501
4386JX-RAY DIFFRACTIONLocal ncs0.059380.0501
4487EX-RAY DIFFRACTIONLocal ncs0.045260.0501
4488KX-RAY DIFFRACTIONLocal ncs0.045260.0501
4589EX-RAY DIFFRACTIONLocal ncs0.08450.05009
4590LX-RAY DIFFRACTIONLocal ncs0.08450.05009
4691FX-RAY DIFFRACTIONLocal ncs0.05880.0501
4692GX-RAY DIFFRACTIONLocal ncs0.05880.0501
4793FX-RAY DIFFRACTIONLocal ncs0.060660.0501
4794HX-RAY DIFFRACTIONLocal ncs0.060660.0501
4895FX-RAY DIFFRACTIONLocal ncs0.053830.0501
4896IX-RAY DIFFRACTIONLocal ncs0.053830.0501
4997FX-RAY DIFFRACTIONLocal ncs0.060270.0501
4998JX-RAY DIFFRACTIONLocal ncs0.060270.0501
5099FX-RAY DIFFRACTIONLocal ncs0.051290.0501
50100KX-RAY DIFFRACTIONLocal ncs0.051290.0501
51101FX-RAY DIFFRACTIONLocal ncs0.074570.05009
51102LX-RAY DIFFRACTIONLocal ncs0.074570.05009
52103GX-RAY DIFFRACTIONLocal ncs0.059290.0501
52104HX-RAY DIFFRACTIONLocal ncs0.059290.0501
53105GX-RAY DIFFRACTIONLocal ncs0.055260.0501
53106IX-RAY DIFFRACTIONLocal ncs0.055260.0501
54107GX-RAY DIFFRACTIONLocal ncs0.057990.0501
54108JX-RAY DIFFRACTIONLocal ncs0.057990.0501
55109GX-RAY DIFFRACTIONLocal ncs0.050590.0501
55110KX-RAY DIFFRACTIONLocal ncs0.050590.0501
56111GX-RAY DIFFRACTIONLocal ncs0.082240.05009
56112LX-RAY DIFFRACTIONLocal ncs0.082240.05009
57113HX-RAY DIFFRACTIONLocal ncs0.056150.0501
57114IX-RAY DIFFRACTIONLocal ncs0.056150.0501
58115HX-RAY DIFFRACTIONLocal ncs0.054550.0501
58116JX-RAY DIFFRACTIONLocal ncs0.054550.0501
59117HX-RAY DIFFRACTIONLocal ncs0.050120.0501
59118KX-RAY DIFFRACTIONLocal ncs0.050120.0501
60119HX-RAY DIFFRACTIONLocal ncs0.085390.05009
60120LX-RAY DIFFRACTIONLocal ncs0.085390.05009
61121IX-RAY DIFFRACTIONLocal ncs0.055240.0501
61122JX-RAY DIFFRACTIONLocal ncs0.055240.0501
62123IX-RAY DIFFRACTIONLocal ncs0.056990.0501
62124KX-RAY DIFFRACTIONLocal ncs0.056990.0501
63125IX-RAY DIFFRACTIONLocal ncs0.082920.05009
63126LX-RAY DIFFRACTIONLocal ncs0.082920.05009
64127JX-RAY DIFFRACTIONLocal ncs0.051810.0501
64128KX-RAY DIFFRACTIONLocal ncs0.051810.0501
65129JX-RAY DIFFRACTIONLocal ncs0.083940.05009
65130LX-RAY DIFFRACTIONLocal ncs0.083940.05009
66131KX-RAY DIFFRACTIONLocal ncs0.082480.05009
66132LX-RAY DIFFRACTIONLocal ncs0.082480.05009
LS refinement shell

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 20

Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRfactor allNum. reflection allFsc work% reflection obs (%)WRfactor RworkFsc free
2.641-2.7100.374210.37488310.9010.23780.364
2.71-2.7840.224120.328820.31685560.9441.09860.3390.957
2.784-2.8650.323140.3122500.31283780.9383.15110.3180.941
2.865-2.9530.219300.3055170.380940.9386.75810.30.97
2.953-3.050.269500.2818380.28179280.9511.20080.2730.954
3.05-3.1570.371620.28613280.2976130.94718.25820.280.895
3.157-3.2760.3321120.27620150.27973540.95128.9230.2660.932
3.276-3.4090.2881400.25426870.25571040.9639.79450.2380.95
3.409-3.5610.2721990.24131540.24367660.96249.55660.2280.947
3.561-3.7340.2312000.22138330.22265380.96961.68550.2060.965
3.734-3.9360.262500.22142690.22361730.96773.20590.2020.939
3.936-4.1750.2172290.20346390.20458720.97382.90190.1850.969
4.175-4.4620.2072450.18848310.18955480.97691.49240.170.972
4.462-4.8190.2162120.16847480.1751040.98197.17870.1530.97
4.819-5.2780.2512390.18644870.18947630.97899.22320.170.961
5.278-5.8990.2542460.22739700.22942620.9798.92070.2130.96
5.899-6.8080.2621830.23335040.23538200.96896.51830.2220.962
6.808-8.330.2381490.19828540.232310.97792.94340.20.97
8.33-11.7440.2151060.1623880.16225130.98499.24390.1690.97
11.744-106.0270.357790.29713330.314380.93298.19190.540.899
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
11.797-0.72250.43751.11020.63862.2686-0.02390.3950.1069-0.18880.068-0.3270.14430.4233-0.04410.1683-0.03560.11030.3376-0.00490.1481-1.517-50.952-35.601
21.5199-0.74320.43381.648-0.3951.9066-0.0921-0.0371-0.11930.18050.1050.3976-0.0484-0.5268-0.01290.04580.00350.07120.3615-0.02460.1348-26.4877.994-23.574
31.9760.46360.44731.26820.31422.87920.01410.00360.19240.22860.00610.47690.1267-1.0357-0.02020.1563-0.13680.0790.67140.04920.1873-36.088-46.879-34.474
41.30790.77721.04621.77870.50922.57780.3388-0.3210.08450.679-0.26930.29290.2416-0.5449-0.06950.4367-0.0790.08420.30290.01250.0681-12.918-29.1048.349
50.8930.00880.46322.1073-1.01552.5370.03030.2183-0.08440.1666-0.253-0.6061-0.05440.68140.22270.1213-0.0391-0.08580.31610.04080.195615.259-13.676-5.136
62.097-0.26880.41411.61520.05292.72570.14680.9956-0.079-0.3575-0.0236-0.4297-0.04560.5141-0.12330.10590.02110.07770.7386-0.03150.14-3.7094.262-49.701
72.20060.05050.97971.3932-0.4063.2922-0.23530.54190.5542-0.0319-0.1867-0.6274-0.2140.90110.42190.0496-0.1251-0.0560.43540.24960.4394-35.52319.876-89.438
81.8827-0.00690.72291.566-0.8912.81520.1976-0.52110.01590.21250.04320.44210.0132-0.1586-0.24090.0654-0.07110.05640.2801-0.00010.1304-56.946-38.971-71.806
93.29530.03651.54791.49-0.16953.1835-0.2369-1.30160.10510.6466-0.04090.2194-0.347-0.61350.27780.37720.0715-0.00080.7133-0.05770.142-51.18715.99-58.655
101.2746-0.63540.9422.00580.31032.25930.1084-0.3204-0.2647-0.0412-0.21460.73680.039-0.51840.10620.0197-0.0534-0.03280.262-0.02450.2949-80.263-1.937-97.437
111.6182-0.90190.95142.1141-0.82761.89780.5150.606-0.1496-0.8413-0.39870.0130.18320.7255-0.11620.4330.153-0.04050.4075-0.07680.0344-56.388-17.38-117.443
121.83040.84240.95153.36420.28784.62260.05460.2944-0.1919-0.37610.0192-0.6905-0.00812.0309-0.07370.0565-0.00320.07571.1848-0.0330.1439-23.591-35.456-81.404
Refinement TLS group
IDRefine-IDRefine TLS-IDSelectionAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1ALLAp4 - 301
2X-RAY DIFFRACTION2ALLBp4 - 301
3X-RAY DIFFRACTION3ALLCp4 - 301
4X-RAY DIFFRACTION4ALLDp4 - 301
5X-RAY DIFFRACTION5ALLEp4 - 301
6X-RAY DIFFRACTION6ALLFp4 - 301
7X-RAY DIFFRACTION7ALLGp4 - 301
8X-RAY DIFFRACTION8ALLHp4 - 301
9X-RAY DIFFRACTION9ALLIp1 - 301
10X-RAY DIFFRACTION10ALLJp4 - 301
11X-RAY DIFFRACTION11ALLKp4 - 301
12X-RAY DIFFRACTION12ALLLp4 - 301

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