| Software | | Name | Version | Classification |
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| PHENIX | (2.0_5882: ???)refinement| Aimless | | data scaling| XDS | | data reduction| PHASER | | phasing| PDB_EXTRACT | | data extraction | | | | | |
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| Refinement | Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.1→48.83 Å / SU ML: 0.21 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 21.54 / Stereochemistry target values: ML
| Rfactor | Num. reflection | % reflection |
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| Rfree | 0.2126 | 3501 | 4.61 % |
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| Rwork | 0.1779 | - | - |
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| obs | 0.1796 | 75976 | 99.73 % |
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| Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL |
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| Refinement step | Cycle: LAST / Resolution: 2.1→48.83 Å
| Protein | Nucleic acid | Ligand | Solvent | Total |
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| Num. atoms | 7180 | 0 | 139 | 455 | 7774 |
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| Refine LS restraints | | Refine-ID | Type | Dev ideal | Number |
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| X-RAY DIFFRACTION | f_bond_d| 0.004 | 7479 | | X-RAY DIFFRACTION | f_angle_d| 0.716 | 10105 | | X-RAY DIFFRACTION | f_dihedral_angle_d| 18.095 | 2777 | | X-RAY DIFFRACTION | f_chiral_restr| 0.045 | 1104 | | X-RAY DIFFRACTION | f_plane_restr| 0.006 | 1272 | | | | | |
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| LS refinement shell | | Resolution (Å) | Rfactor Rfree | Num. reflection Rfree | Rfactor Rwork | Num. reflection Rwork | Refine-ID | % reflection obs (%) |
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| 2.1-2.13 | 0.2913 | 128 | 0.2552 | 2910 | X-RAY DIFFRACTION | 100 | | 2.13-2.16 | 0.2945 | 126 | 0.2451 | 2903 | X-RAY DIFFRACTION | 100 | | 2.16-2.19 | 0.2795 | 131 | 0.239 | 2906 | X-RAY DIFFRACTION | 100 | | 2.19-2.23 | 0.2822 | 142 | 0.229 | 2876 | X-RAY DIFFRACTION | 100 | | 2.23-2.26 | 0.2577 | 155 | 0.2234 | 2899 | X-RAY DIFFRACTION | 100 | | 2.26-2.3 | 0.2501 | 115 | 0.2042 | 2860 | X-RAY DIFFRACTION | 100 | | 2.3-2.34 | 0.2804 | 118 | 0.201 | 2948 | X-RAY DIFFRACTION | 100 | | 2.34-2.39 | 0.2849 | 113 | 0.1973 | 2942 | X-RAY DIFFRACTION | 100 | | 2.39-2.44 | 0.2249 | 120 | 0.1839 | 2848 | X-RAY DIFFRACTION | 100 | | 2.44-2.49 | 0.2422 | 149 | 0.1829 | 2899 | X-RAY DIFFRACTION | 100 | | 2.49-2.55 | 0.1918 | 157 | 0.1794 | 2870 | X-RAY DIFFRACTION | 100 | | 2.55-2.61 | 0.2408 | 146 | 0.1853 | 2859 | X-RAY DIFFRACTION | 100 | | 2.61-2.68 | 0.2143 | 131 | 0.1825 | 2923 | X-RAY DIFFRACTION | 100 | | 2.68-2.76 | 0.2249 | 166 | 0.1792 | 2878 | X-RAY DIFFRACTION | 100 | | 2.76-2.85 | 0.2109 | 182 | 0.1864 | 2839 | X-RAY DIFFRACTION | 100 | | 2.85-2.95 | 0.2317 | 136 | 0.1841 | 2918 | X-RAY DIFFRACTION | 100 | | 2.95-3.07 | 0.2218 | 110 | 0.1786 | 2912 | X-RAY DIFFRACTION | 100 | | 3.07-3.21 | 0.2119 | 148 | 0.1839 | 2886 | X-RAY DIFFRACTION | 100 | | 3.21-3.38 | 0.2244 | 151 | 0.1893 | 2889 | X-RAY DIFFRACTION | 100 | | 3.38-3.59 | 0.2134 | 147 | 0.1755 | 2910 | X-RAY DIFFRACTION | 100 | | 3.59-3.87 | 0.181 | 156 | 0.1539 | 2876 | X-RAY DIFFRACTION | 99 | | 3.87-4.26 | 0.1482 | 125 | 0.1372 | 2903 | X-RAY DIFFRACTION | 99 | | 4.26-4.87 | 0.1638 | 139 | 0.1338 | 2920 | X-RAY DIFFRACTION | 100 | | 4.87-6.14 | 0.1932 | 129 | 0.1655 | 2954 | X-RAY DIFFRACTION | 100 | | 6.14-48.83 | 0.2166 | 181 | 0.1882 | 2947 | X-RAY DIFFRACTION | 99 |
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| Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION | ID | L11 (°2) | L12 (°2) | L13 (°2) | L22 (°2) | L23 (°2) | L33 (°2) | S11 (Å °) | S12 (Å °) | S13 (Å °) | S21 (Å °) | S22 (Å °) | S23 (Å °) | S31 (Å °) | S32 (Å °) | S33 (Å °) | T11 (Å2) | T12 (Å2) | T13 (Å2) | T22 (Å2) | T23 (Å2) | T33 (Å2) | Origin x (Å) | Origin y (Å) | Origin z (Å) |
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| 1 | 0.3652 | 1.0827 | 0.2005 | 4.3421 | -0.1143 | 1.6658 | 0.0604 | -0.1959 | -0.1467 | -0.0595 | -0.1 | -0.2787 | 0.0401 | 0.0152 | 0.0189 | 0.2576 | -0.0111 | -0.0076 | 0.2332 | 0.0422 | 0.2497 | -3.3484 | -17.3815 | 38.6864 | | 2 | 3.6027 | -1.1532 | -0.7528 | 3.5077 | 1.7019 | 1.3414 | -0.1428 | -0.2516 | 0.0997 | 0.3496 | 0.2555 | -0.2867 | 0.0328 | 0.4165 | -0.1086 | 0.2554 | 0.012 | -0.0128 | 0.2357 | -0.0403 | 0.2302 | 12.4784 | 9.2703 | 40.0772 | | 3 | 2.4214 | -0.1201 | 0.012 | 2.6983 | 0.4601 | 1.8817 | 0.0602 | -0.0109 | -0.1289 | 0.1117 | 0.0001 | -0.1892 | 0.2159 | 0.2014 | -0.0688 | 0.2104 | 0.0133 | -0.0294 | 0.162 | -0.0087 | 0.1553 | 7.7444 | -6.8285 | 33.5464 | | 4 | 0.8571 | -0.0945 | -0.3315 | 1.7791 | 0.8136 | 1.3992 | 0.0193 | -0.0374 | 0.0417 | 0.007 | 0.0403 | -0.1382 | -0.0213 | 0.0613 | -0.05 | 0.1829 | 0.0133 | -0.0104 | 0.1434 | 0.0013 | 0.1758 | 4.0032 | 3.3689 | 33.9937 | | 5 | 2.8001 | 0.4049 | 0.5526 | 2.3907 | 1.3068 | 2.9099 | 0.1655 | -0.2964 | -0.0974 | 0.4069 | 0.0665 | -0.3313 | 0.3807 | 0.1236 | -0.2129 | 0.412 | 0.0271 | -0.0493 | 0.2613 | -0.0694 | 0.2649 | 5.4949 | 16.9611 | 53.6988 | | 6 | 2.1374 | 0.6237 | -0.497 | 2.0411 | -0.0861 | 3.8852 | -0.0033 | 0.347 | 0.0847 | -0.3116 | -0.0886 | 0.0479 | -0.0205 | -0.2772 | 0.0659 | 0.29 | 0.0425 | 0.0068 | 0.2215 | -0.0237 | 0.2663 | -4.1313 | 17.2295 | 35.3728 | | 7 | 2.4034 | 2.3859 | 1.7098 | 6.4128 | 2.8413 | 2.4188 | 0.1549 | -0.1934 | 0.2003 | 0.4045 | -0.2525 | 0.4609 | 0.0941 | -0.3602 | 0.0998 | 0.2198 | -0.0143 | 0.0144 | 0.2258 | -0.0072 | 0.2013 | -9.6168 | 1.3055 | 40.7926 | | 8 | 2.3988 | 1.0936 | -0.9472 | 3.1262 | 0.5091 | 2.4209 | 0.022 | -0.2066 | 0.0433 | 0.2271 | -0.0223 | 0.0091 | 0.1065 | 0.1546 | -0.0151 | 0.188 | 0.0245 | -0.0389 | 0.1585 | 0.0089 | 0.1477 | -3.1063 | -4.1932 | 42.2436 | | 9 | 6.3531 | 0.8157 | 0.3378 | 2.1892 | -0.2935 | 3.5155 | 0.1544 | -0.7034 | 0.2548 | 0.3822 | -0.1894 | -0.0049 | 0.049 | 0.1068 | 0.0281 | 0.3429 | -0.0164 | -0.0136 | 0.2437 | 0.042 | 0.1993 | -3.0227 | -11.3779 | 46.692 | | 10 | 0.7795 | -1.4044 | -0.3434 | 4.7907 | -0.8907 | 1.6972 | -0.1683 | 0.3046 | 0.1877 | 0.4678 | 0.0113 | -0.3102 | -0.3467 | 0.1418 | 0.1391 | 0.318 | 0.016 | -0.0446 | 0.2031 | 0.0373 | 0.241 | -2.038 | 17.3514 | 9.0101 | | 11 | 2.0802 | -0.5577 | -0.0783 | 2.9743 | 1.0786 | 0.9794 | 0.0267 | 0.0513 | 0.006 | -0.1355 | 0.1141 | -0.3541 | -0.1241 | 0.206 | -0.1459 | 0.1999 | -0.0185 | 0.0267 | 0.1929 | -0.006 | 0.1804 | 11.0458 | -0.1046 | 12.3841 | | 12 | 0.6507 | 0.3959 | 0.0118 | 1.8847 | 1.0173 | 1.4517 | 0.0068 | 0.0842 | -0.0096 | -0.039 | 0.0911 | -0.1746 | -0.023 | 0.1883 | -0.0808 | 0.1995 | 0.0016 | -0.0058 | 0.1736 | -0.0001 | 0.1653 | 5.0374 | -3.6314 | 14.1467 | | 13 | 6.0451 | -1.6567 | 1.5016 | 6.1045 | -0.3161 | 4.8315 | 0.1845 | 0.6854 | 0.4602 | -0.1989 | 0.0369 | -0.4376 | -0.3344 | 0.3795 | -0.252 | 0.4222 | -0.0644 | 0.1246 | 0.2988 | -0.0516 | 0.3445 | 11.9118 | -16.0186 | -8.9495 | | 14 | 0.9221 | -0.9647 | -0.1384 | 3.274 | 0.1483 | 0.8175 | 0.0427 | 0.0715 | -0.0869 | -0.1033 | 0.0198 | 0.054 | -0.0003 | -0.0547 | -0.0684 | 0.1575 | -0.0083 | -0.0183 | 0.1755 | -0.0027 | 0.1469 | -2.6539 | -7.3837 | 6.3785 | | 15 | 4.2971 | 0.0337 | 0.9318 | 1.9327 | -0.0805 | 3.916 | 0.209 | 0.4117 | -0.0891 | -0.3394 | -0.0411 | -0.0352 | -0.015 | 0.1376 | -0.1783 | 0.352 | 0.0118 | 0.0231 | 0.2523 | 0.0831 | 0.2158 | -1.2045 | 11.1273 | 1.2426 | | 16 | 6.8776 | 6.9575 | -5.7088 | 7.4064 | -5.0087 | 6.3729 | 0.5301 | -0.1364 | 0.8079 | 0.424 | -0.2378 | 0.6552 | -0.6099 | -0.1829 | -0.3589 | 0.2892 | 0.0729 | -0.0165 | 0.3354 | -0.0328 | 0.4357 | -33.6265 | 12.9578 | 30.9871 | | 17 | 4.1948 | -1.087 | 0.2145 | 1.3391 | -1.0989 | 1.0395 | -0.1217 | -1.0041 | 0.0308 | 0.2886 | 0.1095 | 0.4933 | -0.4237 | -0.715 | 0.0592 | 0.2987 | 0.0105 | 0.0691 | 0.5385 | -0.0781 | 0.3722 | -40.0647 | 2.3431 | 40.878 | | 18 | 5.3426 | 2.6448 | -2.4682 | 6.0154 | -3.1301 | 6.1717 | 0.2614 | 0.6023 | 0.5735 | 0.0388 | 0.1622 | 0.7928 | -0.4215 | -0.8398 | -0.3253 | 0.2509 | 0.099 | -0.0131 | 0.3578 | -0.0161 | 0.4673 | -42.149 | 11.2101 | 23.6793 | | 19 | 2.0188 | 0.1802 | -0.1902 | 1.6886 | 0.5397 | 2.0448 | 0.0743 | -0.0268 | -0.0098 | -0.2359 | -0.2557 | 0.0508 | -0.057 | -0.1181 | 0.1429 | 0.1992 | 0.0367 | -0.0221 | 0.2836 | -0.0104 | 0.3003 | -31.8399 | 6.7666 | 24.9761 | | 20 | 1.8282 | 0.3113 | 0.1632 | 1.6905 | -0.7109 | 1.3949 | 0.1854 | -0.2816 | 0.2126 | 0.1509 | -0.1257 | 0.2435 | -0.1634 | -0.501 | -0.1393 | 0.1849 | -0.0029 | 0.0088 | 0.3006 | -0.0349 | 0.2545 | -30.0956 | 3.9666 | 34.9593 | | 21 | 4.0202 | 1.0626 | 0.0372 | 0.7537 | 0.7319 | 1.1028 | 0.679 | -1.0472 | 1.0666 | 0.2605 | -0.7991 | 0.5023 | 0.0927 | -0.1115 | 0.0043 | 0.8066 | 0.0559 | 0.1159 | 1.0536 | -0.2566 | 0.7109 | -38.0835 | 10.9607 | 57.0667 | | 22 | 4.1607 | 1.369 | 0.0694 | 4.5654 | 0.1587 | 3.9189 | 0.2377 | -0.9749 | -0.0883 | 0.8385 | -0.3519 | 0.5059 | 0.419 | -0.353 | 0.116 | 0.4232 | -0.0844 | 0.1091 | 0.6226 | -0.0106 | 0.3004 | -31.2665 | 1.7274 | 52.8845 | | 23 | 2.1187 | 0.5953 | 0.0824 | 2.278 | -0.5246 | 3.1014 | 0.0305 | -0.2556 | 0.1724 | 0.0974 | -0.0541 | 0.0372 | -0.1547 | -0.0248 | 0.0413 | 0.218 | 0.0239 | 0.0002 | 0.2757 | -0.0345 | 0.2769 | -22.8616 | 7.883 | 37.2291 | | 24 | 3.7586 | -0.0048 | 0.733 | 2.2881 | 1.2234 | 4.0508 | 0.1365 | -0.247 | 0.7204 | 0.0206 | -0.0897 | 0.1634 | -0.7623 | 0.005 | -0.0213 | 0.532 | 0.0472 | 0.0178 | 0.2533 | -0.045 | 0.5938 | -26.1079 | 23.5493 | 30.2633 | | 25 | 2.2369 | -0.4204 | -0.0461 | 1.8555 | -0.5287 | 2.3347 | 0.0044 | 0.269 | -0.2652 | -0.1183 | -0.1197 | 0.1615 | 0.2122 | -0.3759 | 0.0719 | 0.1834 | -0.0069 | -0.0072 | 0.3022 | -0.0606 | 0.2757 | -34.8435 | -11.0098 | 14.4242 | | 26 | 1.8967 | 0.1066 | -0.198 | 1.2067 | -0.165 | 0.0401 | 0.0952 | 0.3676 | -0.0688 | -0.089 | -0.1343 | 0.2106 | -0.0602 | -0.2537 | 0.0179 | 0.1638 | 0.0413 | -0.0127 | 0.3199 | -0.0161 | 0.2404 | -30.9049 | -5.3689 | 12.8878 | | 27 | 2.9897 | -0.9688 | 0.1491 | 0.3698 | 0.0419 | 0.345 | -0.1327 | 0.9539 | -0.5774 | -0.2347 | -0.0777 | 0.2396 | -0.3039 | -0.1443 | 0.3244 | 0.7538 | -0.0161 | -0.0794 | 0.8612 | -0.1205 | 0.5455 | -34.5728 | -12.6796 | -12.5599 | | 28 | 4.367 | -1.7944 | 0.735 | 3.9331 | -1.3522 | 4.5582 | 0.2637 | 1.0739 | 0.0778 | -0.6045 | -0.3678 | 0.1458 | -0.0288 | -0.5407 | 0.0626 | 0.4119 | 0.0464 | 0.0129 | 0.7431 | 0.0748 | 0.2872 | -28.3274 | -3.7211 | -8.0056 | | 29 | 1.6915 | -0.0745 | -0.5234 | 2.0043 | -0.4059 | 2.1689 | 0.0571 | 0.2503 | -0.0742 | -0.1429 | -0.1065 | 0.0623 | -0.0055 | -0.1561 | 0.0374 | 0.191 | 0.0277 | -0.0083 | 0.3105 | -0.0331 | 0.2403 | -21.1937 | -8.6446 | 8.3757 | | 30 | 6.9248 | -0.4746 | -0.2569 | 3.5256 | 1.0134 | 4.2665 | -0.1216 | -0.0465 | -0.8644 | -0.1288 | -0.0251 | 0.303 | 0.5194 | -0.4038 | 0.1157 | 0.3698 | -0.0472 | -0.019 | 0.2521 | -0.0749 | 0.5285 | -25.1727 | -24.6904 | 16.2563 |
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| Refinement TLS group | | ID | Refine-ID | Refine TLS-ID | Selection details |
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| 1 | X-RAY DIFFRACTION | 1 | chain 'A' and (resid 3 through 15 )| 2 | X-RAY DIFFRACTION | 2 | chain 'A' and (resid 17 through 37 )| 3 | X-RAY DIFFRACTION | 3 | chain 'A' and (resid 38 through 66 )| 4 | X-RAY DIFFRACTION | 4 | chain 'A' and (resid 67 through 105 )| 5 | X-RAY DIFFRACTION | 5 | chain 'A' and (resid 106 through 138 )| 6 | X-RAY DIFFRACTION | 6 | chain 'A' and (resid 139 through 158 )| 7 | X-RAY DIFFRACTION | 7 | chain 'A' and (resid 159 through 179 )| 8 | X-RAY DIFFRACTION | 8 | chain 'A' and (resid 180 through 201 )| 9 | X-RAY DIFFRACTION | 9 | chain 'A' and (resid 202 through 238 )| 10 | X-RAY DIFFRACTION | 10 | chain 'B' and (resid 3 through 15 )| 11 | X-RAY DIFFRACTION | 11 | chain 'B' and (resid 17 through 66 )| 12 | X-RAY DIFFRACTION | 12 | chain 'B' and (resid 67 through 105 )| 13 | X-RAY DIFFRACTION | 13 | chain 'B' and (resid 106 through 123 )| 14 | X-RAY DIFFRACTION | 14 | chain 'B' and (resid 124 through 201 )| 15 | X-RAY DIFFRACTION | 15 | chain 'B' and (resid 202 through 237 )| 16 | X-RAY DIFFRACTION | 16 | chain 'C' | | | | | | | | | | | | | | | |
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