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- PDB-9zao: Crystal structure of a glyceraldehyde-3-phosphate dehydrogenase f... -

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Basic information

Entry
Database: PDB / ID: 9zao
TitleCrystal structure of a glyceraldehyde-3-phosphate dehydrogenase from Neisseria gonorrhoeae in complex with NAD (P1 form2)
ComponentsGlyceraldehyde-3-phosphate dehydrogenase
KeywordsOXIDOREDUCTASE / SSGCID / STRUCTURAL GENOMICS / SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE / glyceraldehyde-3-phosphate dehydrogenase
Function / homology
Function and homology information


Oxidoreductases; Acting on the aldehyde or oxo group of donors; With NAD+ or NADP+ as acceptor / oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / glucose metabolic process / NAD binding / NADP binding
Similarity search - Function
Glyceraldehyde 3-phosphate dehydrogenase, active site / Glyceraldehyde 3-phosphate dehydrogenase active site. / Glyceraldehyde-3-phosphate dehydrogenase, type I / Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain / Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain / Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain / Glyceraldehyde/Erythrose phosphate dehydrogenase family / Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain / Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain / NAD(P)-binding domain superfamily
Similarity search - Domain/homology
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / Glyceraldehyde-3-phosphate dehydrogenase
Similarity search - Component
Biological speciesNeisseria gonorrhoeae NCCP11945 (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.09 Å
AuthorsSeattle Structural Genomics Center for Infectious Disease / Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Funding support United States, 2items
OrganizationGrant numberCountry
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)75N93022C00036 United States
National Institutes of Health/Office of the DirectorS10OD030394 United States
CitationJournal: To be published
Title: Crystal structure of a glyceraldehyde-3-phosphate dehydrogenase from Neisseria gonorrhoeae in complex with NAD (P1 form2)
Authors: Liu, L. / Lovell, S. / Seibold, S. / Battaile, K.P.
History
DepositionNov 19, 2025Deposition site: RCSB / Processing site: RCSB
Revision 1.0Dec 24, 2025Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: Glyceraldehyde-3-phosphate dehydrogenase
B: Glyceraldehyde-3-phosphate dehydrogenase
C: Glyceraldehyde-3-phosphate dehydrogenase
D: Glyceraldehyde-3-phosphate dehydrogenase
E: Glyceraldehyde-3-phosphate dehydrogenase
F: Glyceraldehyde-3-phosphate dehydrogenase
G: Glyceraldehyde-3-phosphate dehydrogenase
H: Glyceraldehyde-3-phosphate dehydrogenase
I: Glyceraldehyde-3-phosphate dehydrogenase
J: Glyceraldehyde-3-phosphate dehydrogenase
K: Glyceraldehyde-3-phosphate dehydrogenase
L: Glyceraldehyde-3-phosphate dehydrogenase
M: Glyceraldehyde-3-phosphate dehydrogenase
N: Glyceraldehyde-3-phosphate dehydrogenase
O: Glyceraldehyde-3-phosphate dehydrogenase
P: Glyceraldehyde-3-phosphate dehydrogenase
Q: Glyceraldehyde-3-phosphate dehydrogenase
R: Glyceraldehyde-3-phosphate dehydrogenase
S: Glyceraldehyde-3-phosphate dehydrogenase
T: Glyceraldehyde-3-phosphate dehydrogenase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)745,31237
Polymers736,59620
Non-polymers8,71617
Water00
1
A: Glyceraldehyde-3-phosphate dehydrogenase
B: Glyceraldehyde-3-phosphate dehydrogenase
C: Glyceraldehyde-3-phosphate dehydrogenase
D: Glyceraldehyde-3-phosphate dehydrogenase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)149,3559
Polymers147,3194
Non-polymers2,0365
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area18780 Å2
ΔGint-127 kcal/mol
Surface area42450 Å2
MethodPISA
2
E: Glyceraldehyde-3-phosphate dehydrogenase
F: Glyceraldehyde-3-phosphate dehydrogenase
G: Glyceraldehyde-3-phosphate dehydrogenase
H: Glyceraldehyde-3-phosphate dehydrogenase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)149,3328
Polymers147,3194
Non-polymers2,0134
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area18660 Å2
ΔGint-113 kcal/mol
Surface area42430 Å2
MethodPISA
3
I: Glyceraldehyde-3-phosphate dehydrogenase
J: Glyceraldehyde-3-phosphate dehydrogenase
K: Glyceraldehyde-3-phosphate dehydrogenase
L: Glyceraldehyde-3-phosphate dehydrogenase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)149,9738
Polymers147,3194
Non-polymers2,6544
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area19720 Å2
ΔGint-121 kcal/mol
Surface area41720 Å2
MethodPISA
4
M: Glyceraldehyde-3-phosphate dehydrogenase
N: Glyceraldehyde-3-phosphate dehydrogenase
O: Glyceraldehyde-3-phosphate dehydrogenase
P: Glyceraldehyde-3-phosphate dehydrogenase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)148,0066
Polymers147,3194
Non-polymers6862
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area16110 Å2
ΔGint-100 kcal/mol
Surface area42570 Å2
MethodPISA
5
Q: Glyceraldehyde-3-phosphate dehydrogenase
R: Glyceraldehyde-3-phosphate dehydrogenase
S: Glyceraldehyde-3-phosphate dehydrogenase
T: Glyceraldehyde-3-phosphate dehydrogenase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)148,6466
Polymers147,3194
Non-polymers1,3272
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area17330 Å2
ΔGint-96 kcal/mol
Surface area42300 Å2
MethodPISA
Unit cell
Length a, b, c (Å)76.358, 139.715, 222.702
Angle α, β, γ (deg.)76.30, 87.32, 88.12
Int Tables number1
Space group name H-MP1

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Components

#1: Protein
Glyceraldehyde-3-phosphate dehydrogenase


Mass: 36829.789 Da / Num. of mol.: 20
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Neisseria gonorrhoeae NCCP11945 (bacteria)
Gene: NGK_2321 / Plasmid: NegoA.00617.a.B1 / Production host: Escherichia coli BL21(DE3) (bacteria)
References: UniProt: B4RPP8, Oxidoreductases; Acting on the aldehyde or oxo group of donors; With NAD+ or NADP+ as acceptor
#2: Chemical
ChemComp-NAD / NICOTINAMIDE-ADENINE-DINUCLEOTIDE


Mass: 663.425 Da / Num. of mol.: 13 / Source method: obtained synthetically / Formula: C21H27N7O14P2 / Feature type: SUBJECT OF INVESTIGATION / Comment: NAD*YM
#3: Chemical
ChemComp-NA / SODIUM ION


Mass: 22.990 Da / Num. of mol.: 4 / Source method: obtained synthetically / Formula: Na
Has ligand of interestY
Has protein modificationN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 3.13 Å3/Da / Density % sol: 60.7 %
Crystal growTemperature: 291 K / Method: vapor diffusion, sitting drop / pH: 6.5
Details: Morpheus Fusion, B4 : 20 mM Sodium formate, 20 mM Ammonium acetate, 20 mM Sodium citrate tribasic dihydrate, 20 mM Potassium sodium tartrate tetrahydrate, 20 mM Sodium oxamate, 0.12 M ...Details: Morpheus Fusion, B4 : 20 mM Sodium formate, 20 mM Ammonium acetate, 20 mM Sodium citrate tribasic dihydrate, 20 mM Potassium sodium tartrate tetrahydrate, 20 mM Sodium oxamate, 0.12 M Ethyleneglycol 40 mM Imidazole, 60 mM MES monohydrate (acid), pH 6.5, 20% v/v PEG 500 MME, 10 % w/v PEG 20000, 10% iso-Propanol. NegoA.00617.a.B1.PS38018 at 8 mg/mL. cocrystallization with NAD, plate 20064 B4 drop 1, Puck: PSL-2206, Cryo: direct

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: NSLS-II / Beamline: 19-ID / Wavelength: 0.9786 Å
DetectorType: DECTRIS EIGER2 XE 9M / Detector: PIXEL / Date: Jun 28, 2025
RadiationMonochromator: Double Crystal Si 111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.9786 Å / Relative weight: 1
ReflectionResolution: 3.09→48.29 Å / Num. obs: 159633 / % possible obs: 97.5 % / Redundancy: 3.5 % / CC1/2: 0.995 / Rmerge(I) obs: 0.102 / Rpim(I) all: 0.064 / Rrim(I) all: 0.121 / Χ2: 1.14 / Net I/σ(I): 10 / Num. measured all: 563752
Reflection shellResolution: 3.09→3.17 Å / % possible obs: 97.7 % / Redundancy: 3.7 % / Rmerge(I) obs: 1.004 / Num. measured all: 44015 / Num. unique obs: 11904 / CC1/2: 0.689 / Rpim(I) all: 0.606 / Rrim(I) all: 1.175 / Χ2: 1.02 / Net I/σ(I) obs: 1.4

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Processing

Software
NameVersionClassification
PHENIX(dev_5438: ???)refinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing
PDB_EXTRACTdata extraction
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 3.09→48.29 Å / SU ML: 0.45 / Cross valid method: FREE R-VALUE / σ(F): 1.96 / Phase error: 27.26 / Stereochemistry target values: ML
RfactorNum. reflection% reflection
Rfree0.2335 7914 4.96 %
Rwork0.1809 --
obs0.1834 159519 97.5 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL
Refinement stepCycle: LAST / Resolution: 3.09→48.29 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms49281 0 576 0 49857
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00550635
X-RAY DIFFRACTIONf_angle_d0.76668889
X-RAY DIFFRACTIONf_dihedral_angle_d14.39718667
X-RAY DIFFRACTIONf_chiral_restr0.0498162
X-RAY DIFFRACTIONf_plane_restr0.0078922
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
3.09-3.130.41482410.35795032X-RAY DIFFRACTION98
3.13-3.160.34842430.33155132X-RAY DIFFRACTION98
3.16-3.20.37092470.32475098X-RAY DIFFRACTION98
3.2-3.240.37972390.30055066X-RAY DIFFRACTION98
3.24-3.280.3212770.28065084X-RAY DIFFRACTION98
3.28-3.330.33332200.26815136X-RAY DIFFRACTION98
3.33-3.380.34552660.26374952X-RAY DIFFRACTION98
3.38-3.430.32222490.2555105X-RAY DIFFRACTION98
3.43-3.480.32032610.25585166X-RAY DIFFRACTION98
3.48-3.540.28452540.2534967X-RAY DIFFRACTION98
3.54-3.60.32672710.2465091X-RAY DIFFRACTION98
3.6-3.660.2882970.23655030X-RAY DIFFRACTION97
3.66-3.730.28232910.22774951X-RAY DIFFRACTION97
3.73-3.810.27493100.21855047X-RAY DIFFRACTION97
3.81-3.890.23832820.19215029X-RAY DIFFRACTION98
3.89-3.980.23582570.18055088X-RAY DIFFRACTION98
3.98-4.080.22892580.17025014X-RAY DIFFRACTION98
4.08-4.190.22622890.16815080X-RAY DIFFRACTION97
4.19-4.320.21453060.16164960X-RAY DIFFRACTION97
4.32-4.460.1822780.14735079X-RAY DIFFRACTION97
4.46-4.610.17522960.1315005X-RAY DIFFRACTION97
4.61-4.80.1962620.13645079X-RAY DIFFRACTION97
4.8-5.020.20612730.14074955X-RAY DIFFRACTION97
5.02-5.280.19952310.14094979X-RAY DIFFRACTION96
5.28-5.610.20742650.15315041X-RAY DIFFRACTION97
5.61-6.040.2172490.15765125X-RAY DIFFRACTION99
6.05-6.650.24172840.17635096X-RAY DIFFRACTION99
6.65-7.610.16872830.14335109X-RAY DIFFRACTION98
7.61-9.580.17692150.12675104X-RAY DIFFRACTION98
9.58-48.290.21562200.17055005X-RAY DIFFRACTION96
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
11.1044-0.2293-0.32230.9544-0.63010.56340.13490.324-0.2177-0.0579-0.0756-0.1105-0.5801-0.609-0.00090.80210.28230.02490.82570.02150.725710.033460.652434.3044
20.83150.61520.29621.12110.3890.1202-0.12260.2852-0.1926-0.42940.0312-0.2745-0.6876-0.320.04070.95120.1675-0.00070.81330.09140.495125.244260.163416.7725
30.11790.0808-0.01310.1253-0.08160.0608-0.494-0.1858-0.3164-0.61620.1121-0.0537-0.6308-0.5568-00.6714-0.00590.08530.7331-0.05550.775524.448539.469332.7993
4-0.0245-0.00670.03680.0052-0.08020.1141-0.24540.1509-0.2942-0.2596-0.1184-0.3498-0.2442-0.1005-00.8014-0.0046-0.01580.67640.04510.670330.410349.34919.9347
50.5301-0.44370.19430.3832-0.24050.16660.16980.1338-0.2069-0.09230.05230.1269-0.2798-0.0853-00.683-0.02670.15240.51810.0460.527538.707453.385220.8069
60.1030.01920.09170.01520.04540.1052-0.3292-0.03480.4923-0.22290.1943-0.1257-0.58940.0086-0.00051.1899-0.10670.12040.65840.16480.763242.141467.341723.8834
70.6582-0.1091-0.0795-0.04010.01720.7827-0.3190.13310.0945-0.0290.2258-0.1576-0.4437-0.13210.12110.93930.00870.13470.51440.15970.596433.81461.852624.5164
80.236-0.0715-0.13810.21350.1460.97260.1082-0.3467-0.14370.0761-0.14820.37790.72590.3005-0.00960.65740.2227-0.01860.7570.10830.774957.907330.093950.64
90.6546-0.3042-0.46090.29150.35410.43670.0302-0.47630.5862-0.08470.3-0.7484-0.16671.43840.8807-0.03780.12470.12971.8498-0.04251.041569.919737.292640.7187
100.23710.56220.26411.48630.81680.4811-0.3487-0.1328-0.2464-0.41410.2823-0.2803-0.38561.1056-0.19190.32630.03180.24371.02160.02580.879856.906436.720823.4691
110.03020.0073-0.01760.14010.13250.0953-0.1365-0.1908-0.40350.07210.0553-0.2869-0.6770.670500.8144-0.230.1310.69470.08810.868649.475854.110742.6183
120.3759-0.49220.07940.6161-0.22060.2093-0.375-0.33120.005-0.01850.3069-0.4822-0.15140.6843-0.14840.4827-0.13020.22780.7745-0.04320.90452.922247.282327.2834
130.2447-0.09380.01780.4229-0.01870.08580.0248-0.0162-0.03510.09340.1817-0.01490.38640.1716-00.57780.08090.21440.53740.02040.617546.070643.664522.3461
140.0169-0.03890.03630.0293-0.05330.0406-0.33740.4512-0.9264-0.27410.3391-0.18670.24560.230300.63250.00290.1280.8644-0.1330.979842.375229.577220.0622
150.95410.2419-0.33390.48350.45790.8306-0.07190.1195-0.5034-0.56240.21290.00940.05490.1401-0.01730.4897-0.00630.16970.639-0.00770.792648.307934.310226.5937
160.34550.4849-0.18380.71040.30891.02430.03820.16930.05050.2233-0.11450.0387-0.0132-0.105600.56570.03870.07570.53210.06270.896822.986419.887737.4726
170.28590.1575-0.07270.0966-0.17350.66870.0372-0.1984-0.25910.2788-0.08810.3824-0.0083-0.5989-0.0040.5995-0.12990.14860.73470.08031.017411.479818.069852.1962
180.63210.104-0.57681.40250.34030.92770.0262-0.0922-0.19490.2506-0.12540.1046-0.031-0.2252-0.01050.4989-0.01850.05060.44980.18860.623326.385533.548962.0292
190.95910.3809-0.57071.0794-0.45360.99840.1915-0.0406-0.25550.062-0.0514-0.2542-1.0790.50710.02681.0171-0.24950.05440.61660.11650.732949.24970.793754.3978
200.08510.18520.25280.80510.09581.2641-0.1183-0.28180.06460.2604-0.02330.0628-0.53330.0038-0.00010.7806-0.01140.04920.63210.07270.630932.21856.868866.4867
210.9069-0.18740.2710.94391.14741.54250.19720.05970.1268-0.0275-0.34020.4519-0.0912-0.1192-0.00920.4685-0.00690.02170.609-0.05961.107529.9277131.513529.2797
221.8494-0.12580.84471.17650.13410.7510.06140.04890.1182-0.376-0.27450.22620.1389-0.2776-0.02990.46610.0065-0.04510.5799-0.09890.791835.9149113.423513.5371
230.2687-0.07930.09580.05280.05720.13250.26170.0142-0.2841-0.05290.3510.18560.67120.3125-00.85760.2854-0.1721.0143-0.27491.347272.916389.981118.8248
240.03140.09490.02772.14360.61910.16040.3878-0.0092-0.04731.13580.1115-0.0389-0.03220.42610.04150.53090.1134-0.02030.9176-0.17660.933876.6668100.070925.1094
250.16870.21820.13090.6398-0.05880.18540.17210.8914-0.7134-0.67470.1788-0.2543-0.03380.59790.00140.83950.23380.05211.1847-0.35051.178174.497891.44696.3488
260.2202-0.0488-0.00070.2955-0.50420.7980.45940.2872-0.3751-0.3104-0.24290.26610.42290.141900.91930.108-0.07020.8688-0.24681.069751.400388.09659.506
270.04880.06840.00550.1007-0.0123-0.002-0.01820.7042-0.3985-0.07380.12820.01590.03660.4555-01.1008-0.13060.2130.9279-0.12080.874560.443113.60199.496
280.1884-0.18530.19740.5831-0.36110.22010.06320.7275-0.2728-0.62660.1125-0.36940.44340.054400.7496-0.08550.06590.7476-0.09870.862747.126998.83889.8817
290.0890.0199-0.1460.08310.16090.43140.2082-0.0989-0.21740.1683-0.13880.15950.8125-0.143500.8896-0.09110.03840.6973-0.0780.953943.057591.317522.6264
300.1389-0.05290.04960.18540.21750.1060.06070.2106-0.0803-0.32450.15770.27410.62440.0261-00.73840.04-0.040.6736-0.16470.873855.24389.721715.6922
310.3749-0.23040.57240.0761-0.30360.67720.14250.17150.2670.1917-0.1557-0.11110.5952-0.200.9976-0.19080.05710.6466-0.01820.782449.803197.740648.3143
320.44480.10150.03420.2748-0.34330.468-0.056-0.65140.62460.5160.0271-0.09640.38750.213600.9216-0.0241-0.04920.712-0.04710.900256.8255108.475761.8779
330.2643-0.0134-0.17731.35150.49640.77510.0495-0.10930.14020.17990.1515-0.2779-0.05710.2890.00280.3847-0.06710.04780.691-0.1310.869169.4737117.824844.5565
340.0518-0.07240.11670.0782-0.1130.29590.10780.3479-0.191-0.3499-0.19690.08960.01890.293901.0313-0.22680.17550.93510.1990.884562.9903132.86764.3699
350.37370.39380.31610.39010.31150.240.49210.5636-0.02640.4822-0.20370.56630.08340.9165-0.00120.83160.0420.13141.12210.11250.882161.5976130.6230.4512
360.12970.5360.59953.05143.17293.46170.2850.87230.58490.21850.5877-0.8745-0.35211.6350.87050.8018-0.29670.39021.94430.22051.053378.8166135.60335.4526
371.10280.2470.55881.131-0.42851.205-0.17020.15670.3253-0.10410.2024-0.3107-0.70730.54040.33820.4372-0.35490.25940.7308-0.02381.178170.593134.773128.3124
380.119-0.03540.00630.15150.16220.1722-0.4051-0.10130.28360.5467-0.1590.1388-0.0951-0.239301.16630.0973-0.17320.8277-0.00761.02930.6743150.5634111.964
390.1011-0.09440.08330.282-0.36080.49420.1406-0.75630.3976-0.0332-0.7155-0.3126-0.2178-0.0416-0.0391.07060.0203-0.11990.7123-0.09470.96830.659150.9868116.5701
400.27060.2867-0.41330.3049-0.44050.6651-0.6808-0.4147-0.1038-0.55530.12820.2214-0.0113-1.2888-0.02160.98690.3366-0.27281.3875-0.2781.170616.5063152.1542107.1708
410.08760.0797-0.05810.0534-0.0570.13880.05610.31150.449-0.5703-0.45680.09250.2758-0.2781-01.28010.3945-0.22670.9916-0.00871.216119.8001153.063594.6821
420.9321-0.29070.50040.98210.07660.3185-0.0968-0.08620.1374-0.1747-0.04860.1158-0.4331-0.4675-00.81140.1025-0.12630.72010.19690.577730.0655135.923388.7981
432.3074-0.07440.22190.4001-0.33410.3176-0.1361-0.32110.8225-0.28820.2582-0.3224-0.053-0.0160.37151.18210.2423-0.1790.33740.50910.471934.7591142.584389.4402
440.7627-0.35270.76830.3986-0.43680.83920.1105-0.40680.032-0.2158-0.1323-0.01720.7716-0.2602-0.01611.0183-0.0087-0.08970.57540.12840.73250.703698.478698.5833
450.3337-0.3635-0.24731.35490.13152.3886-0.08750.1389-0.0636-0.47420.03830.00150.4109-0.21100.7501-0.077-0.05490.70320.10270.556837.7089112.657584.037
460.1459-0.3447-0.11471.06530.33410.12040.3295-0.27460.1063-0.3208-0.2661-0.37920.47-0.86820.00590.6141-0.2331-0.08731.23980.15430.67317.7092110.1665115.503
470.8663-0.1837-0.20661.44340.19210.8735-0.2014-0.68950.00440.290.02120.070.1858-0.84910.00930.7336-0.1412-0.0161.40640.14550.637722.8407112.2135126.7297
480.036-0.05720.02660.0776-0.04230.0385-0.0761-0.59430.10251.01140.20910.0319-0.6028-0.753301.00440.1356-0.06630.97560.06490.659631.5437132.0164118.2938
491.09680.3262-0.38530.2869-0.54770.8797-0.0725-0.4675-0.06050.19470.1189-0.08590.1457-0.34910.16430.6359-0.0072-0.12810.68550.17520.412642.0128111.761127.2675
500.1141-0.03950.20810.02680.1030.8640.0935-0.05680.5824-0.4466-0.3340.2607-0.2401-0.1183-0.00010.9056-0.1792-0.01120.67840.19450.941464.2782139.020497.8743
510.1185-0.01340.1320.14270.04520.1190.39740.13550.2273-0.3085-0.5501-0.2160.45820.9381-00.9150.0726-0.03541.3620.24541.311576.2233131.151107.5403
521.34290.1660.6430.9694-0.44981.8169-0.0241-0.25460.22780.3373-0.0772-0.3227-0.23820.263100.7057-0.1075-0.22830.81290.03910.768157.5409130.4417122.8262
530.59040.4947-0.35590.80620.29860.50090.3952-0.2914-0.4037-0.327-0.50850.6319-0.31290.3401-0.00031.4623-0.104-0.15391.0328-0.11221.388130.629444.05125.1239
540.7689-0.1141-0.24670.54050.04110.03980.3251-0.1158-0.14610.1585-0.25880.3370.5681-0.6527-0.00251.2677-0.3524-0.03660.80280.00560.837739.430457.521135.9754
550.15420.0180.09190.04250.00820.03280.66930.4737-0.3305-0.35580.0848-0.310.34530.9378-01.05690.1923-0.11131.2595-0.36141.048577.708573.4673127.8602
560.3254-0.0986-0.10430.20.08490.03310.38550.454-0.2849-0.45060.2040.01120.17170.599-00.85260.1818-0.02891.0823-0.26431.09481.512571.0418126.4761
570.27540.3785-0.03320.5249-0.0991.56170.7597-0.81880.50050.5669-0.42650.13440.06150.2817-01.0987-0.1124-0.05441.1706-0.35990.998365.793179.7639141.362
580.0606-0.0365-0.04790.06670.07210.0811-0.1356-0.0393-0.18460.3164-0.184-0.3882-0.0702-0.4449-0.00692.24610.317-0.51740.93680.0371.041362.943255.5442138.9725
590.39590.27770.11950.6187-0.17240.12970.3624-0.74630.1660.7138-0.17960.06120.4726-0.16401.3138-0.10660.04351.0516-0.11230.957750.803171.441139.4644
600.03490.0120.08360.07290.01760.12540.2332-0.22650.4816-0.136-0.12990.1075-0.47570.031401.15450.06830.040.8471-0.13551.034346.5879.378126.9203
610.2909-0.19310.00410.22810.24190.37980.3771-0.53750.59170.4756-0.15510.4172-0.05860.000600.99570.0027-0.01110.8666-0.20491.002859.27879.7723133.0736
620.7123-0.0069-0.62570.2929-0.26170.6806-0.0488-0.0837-0.0877-0.03750.13990.01570.02810.096201.22350.0354-0.08030.711-0.02710.864850.867572.1953100.9102
630.32640.00720.15020.0428-0.01890.4493-0.04491.0678-0.2948-0.39880.26970.0730.16990.3935-0.00041.24160.0712-0.09960.8036-0.14180.837655.838660.740386.994
640.37230.3989-0.07890.87190.24090.46980.42690.2754-0.330.20710.0821-0.15270.89360.49060.21131.23350.485-0.3240.996-0.28920.894168.465551.1735103.1622
650.0058-0.04430.05520.1164-0.1270.12750.2587-0.2342-0.1743-0.18560.08270.06510.74740.00201.75880.1503-0.33221.14220.05481.296164.425536.2717143.8768
660.0664-0.0949-0.08110.09250.08560.06970.2287-0.63640.2519-1.2925-0.20120.4350.0137-0.545601.5287-0.0492-0.27191.09440.02411.116456.321439.6626144.8902
670.1293-0.1261-0.00770.13960.04460.08780.2274-0.57070.15630.25150.56920.0410.60940.66130.00741.65720.0783-0.44481.97190.39611.426872.041335.734152.0711
680.37260.0438-0.4414-0.0002-0.05390.46190.1425-0.6022-0.9861-0.7483-0.24660.35310.21370.55540.02331.67880.4394-0.50351.27030.2531.516478.362427.7534138.8848
690.8630.7290.1180.55690.1210.01180.1947-0.1519-0.14380.0645-0.437-0.04480.83020.5582-0.24771.77660.7646-0.53230.9657-0.11471.135374.150540.6517120.001
700.73570.04410.0970.1104-0.09470.1664-0.20180.2599-0.5096-0.12380.0896-0.19620.67090.103-0.01711.96920.5-0.2910.7739-0.09211.312865.769331.0998117.0811
710.2457-0.0614-0.01310.03020.02590.0046-0.00950.24220.08970.09370.37890.0144-0.0397-0.1344-01.28470.2439-0.01231.7952-0.05060.797723.8004116.6592202.5467
720.1413-0.1043-0.15560.4901-0.0650.1528-0.0674-0.0202-0.27550.26310.14130.0558-0.0953-0.610501.02580.28680.00191.5993-0.07690.745925.7216113.9066209.8035
730.2784-0.28190.01370.20370.12640.2382-0.1351-0.0818-0.1299-0.41270.12390.42740.2702-0.212601.392-0.16310.06621.7666-0.15290.951129.328391.2133202.5454
740.19640.0258-0.22030.0801-0.04310.15960.4421-0.1178-0.22470.7640.0361-0.44510.0348-0.075301.5591-0.0564-0.09281.5834-0.18420.822544.2704101.4834200.244
750.51260.3994-0.27260.72880.13090.2914-0.10140.2529-0.1669-0.26060.1156-0.09440.2175-0.532401.1527-0.0211-0.03971.3433-0.15530.614330.224892.1067192.1588
760.0244-0.0202-0.03250.0735-0.0570.0630.7302-0.0745-0.25280.0198-0.0426-0.1196-0.056-0.284901.5103-0.09460.0281.6137-0.51221.194668.2048100.159166.8574
770.17920.0037-0.11020.302-0.26050.2693-0.2187-0.56690.17310.0023-0.04030.0782-0.7271-0.4031-01.19-0.0747-0.04781.5478-0.47421.18164.1454107.3377161.9732
780.18950.1203-0.0840.0796-0.01980.0664-0.00180.0891-0.116-0.16970.3587-0.18270.67810.3877-01.39790.01070.00121.4435-0.51451.164663.464186.072163.9729
790.3703-0.16240.0130.353-0.42970.2916-0.1597-0.07090.0188-0.14310.1553-0.40090.0536-0.1661-01.35920.0192-0.0481.5155-0.38580.889351.756190.1199185.893
800.15830.01050.16520.1367-0.0810.18040.0773-0.51670.16470.06450.4458-0.39650.08910.618-01.42890.0375-0.03751.6691-0.44171.182160.866190.4872180.613
810.10310.0520.03590.01470.02910.03470.2333-0.1012-0.112-0.3014-0.4150.2686-0.2545-0.725501.30810.07140.00661.5762-0.56961.148167.0668118.3838199.258
820.28130.394-0.20080.4549-0.2670.1547-0.15820.57790.0429-0.1980.3312-0.65350.20370.169-01.01320.1191-0.02061.4652-0.48851.091667.8346115.1491202.6971
830.16520.13690.06210.2116-0.1710.2270.2830.13380.1344-0.05930.42830.0950.04240.20190.01831.2175-0.00140.08561.4621-0.50871.219366.8038135.6466200.8658
840.60910.22820.04680.3486-0.56240.5880.0495-0.0246-0.02750.23890.1617-0.16890.10470.324801.57280.11540.0091.423-0.25280.81249.7288133.486183.9486
850.25720.2884-0.0550.2347-0.04350.1029-0.1660.33920.05840.09240.1294-0.35720.0934-0.090701.7183-0.08520.11781.6493-0.27620.964459.6277130.3596171.2674
860.22490.1159-0.02960.2009-0.23050.30340.02840.9148-0.5523-0.11710.5103-0.108-0.24990.41930.01331.51790.0220.1581.5731-0.41550.827662.8387131.5111184.7262
870.1256-0.17390.06420.1679-0.0790.0443-0.0771-0.0294-0.03840.68850.4399-0.04-0.09860.1299-01.2912-0.00180.03952.0536-0.1070.738521.8869106.3269167.5417
880.3265-0.1584-0.10220.316-0.00660.0294-0.5826-0.1148-0.1937-0.31660.4064-0.2863-0.2898-0.6188-0.00161.1549-0.0787-0.03881.97790.04050.742324.59113.1798153.0256
890.23320.2107-0.05390.15110.06060.1790.11180.26840.06420.291-0.0869-0.044-0.41740.09301.34890.2361-0.041.8266-0.11390.843929.3663132.8316164.9601
900.069-0.0511-0.02710.02940.01290-0.10610.33030.50750.1905-0.1273-0.0491-0.1114-0.608801.46940.19450.08631.4642-0.19610.9347.5522112.9656166.8301
910.11580.19940.08590.34540.12150.0334-0.03990.15290.0064-0.15090.4523-0.2378-0.50230.06370.00491.57380.0909-0.0361.74160.05240.571440.5137128.6066165.776
920.6337-0.06410.49220.1866-0.04610.2961-0.1349-0.3330.13310.24940.3462-0.2276-0.0099-0.0117-01.34480.19850.05141.3458-0.11670.607433.0246134.1621178.2362
930.0648-0.09330.06110.1497-0.01520.02120.3546-0.31440.3290.6357-0.26360.2038-0.3785-1.53501.49310.23740.02942.1523-0.04210.876826.7444127.1861169.0755
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'A' and (resid 2 through 112 )
2X-RAY DIFFRACTION2chain 'A' and (resid 113 through 179 )
3X-RAY DIFFRACTION3chain 'A' and (resid 180 through 199 )
4X-RAY DIFFRACTION4chain 'A' and (resid 200 through 227 )
5X-RAY DIFFRACTION5chain 'A' and (resid 228 through 254 )
6X-RAY DIFFRACTION6chain 'A' and (resid 255 through 278 )
7X-RAY DIFFRACTION7chain 'A' and (resid 279 through 334 )
8X-RAY DIFFRACTION8chain 'B' and (resid 1 through 82 )
9X-RAY DIFFRACTION9chain 'B' and (resid 83 through 129 )
10X-RAY DIFFRACTION10chain 'B' and (resid 130 through 179 )
11X-RAY DIFFRACTION11chain 'B' and (resid 180 through 199 )
12X-RAY DIFFRACTION12chain 'B' and (resid 200 through 227 )
13X-RAY DIFFRACTION13chain 'B' and (resid 228 through 254 )
14X-RAY DIFFRACTION14chain 'B' and (resid 255 through 278 )
15X-RAY DIFFRACTION15chain 'B' and (resid 279 through 334 )
16X-RAY DIFFRACTION16chain 'C' and (resid 2 through 84 )
17X-RAY DIFFRACTION17chain 'C' and (resid 85 through 150 )
18X-RAY DIFFRACTION18chain 'C' and (resid 151 through 333 )
19X-RAY DIFFRACTION19chain 'D' and (resid 1 through 112 )
20X-RAY DIFFRACTION20chain 'D' and (resid 113 through 334 )
21X-RAY DIFFRACTION21chain 'E' and (resid 1 through 150 )
22X-RAY DIFFRACTION22chain 'E' and (resid 151 through 334 )
23X-RAY DIFFRACTION23chain 'F' and (resid 1 through 33 )
24X-RAY DIFFRACTION24chain 'F' and (resid 34 through 67 )
25X-RAY DIFFRACTION25chain 'F' and (resid 68 through 129 )
26X-RAY DIFFRACTION26chain 'F' and (resid 130 through 179 )
27X-RAY DIFFRACTION27chain 'F' and (resid 180 through 199 )
28X-RAY DIFFRACTION28chain 'F' and (resid 200 through 254 )
29X-RAY DIFFRACTION29chain 'F' and (resid 255 through 303 )
30X-RAY DIFFRACTION30chain 'F' and (resid 304 through 334 )
31X-RAY DIFFRACTION31chain 'G' and (resid 1 through 84 )
32X-RAY DIFFRACTION32chain 'G' and (resid 85 through 150 )
33X-RAY DIFFRACTION33chain 'G' and (resid 151 through 333 )
34X-RAY DIFFRACTION34chain 'H' and (resid 2 through 46 )
35X-RAY DIFFRACTION35chain 'H' and (resid 47 through 84 )
36X-RAY DIFFRACTION36chain 'H' and (resid 85 through 129 )
37X-RAY DIFFRACTION37chain 'H' and (resid 130 through 334 )
38X-RAY DIFFRACTION38chain 'I' and (resid 3 through 46 )
39X-RAY DIFFRACTION39chain 'I' and (resid 47 through 84 )
40X-RAY DIFFRACTION40chain 'I' and (resid 85 through 112 )
41X-RAY DIFFRACTION41chain 'I' and (resid 113 through 150 )
42X-RAY DIFFRACTION42chain 'I' and (resid 151 through 278 )
43X-RAY DIFFRACTION43chain 'I' and (resid 279 through 334 )
44X-RAY DIFFRACTION44chain 'J' and (resid 1 through 84 )
45X-RAY DIFFRACTION45chain 'J' and (resid 85 through 334 )
46X-RAY DIFFRACTION46chain 'K' and (resid 2 through 46 )
47X-RAY DIFFRACTION47chain 'K' and (resid 47 through 179 )
48X-RAY DIFFRACTION48chain 'K' and (resid 180 through 199 )
49X-RAY DIFFRACTION49chain 'K' and (resid 200 through 334 )
50X-RAY DIFFRACTION50chain 'L' and (resid 2 through 84 )
51X-RAY DIFFRACTION51chain 'L' and (resid 85 through 129 )
52X-RAY DIFFRACTION52chain 'L' and (resid 130 through 334 )
53X-RAY DIFFRACTION53chain 'M' and (resid 2 through 179 )
54X-RAY DIFFRACTION54chain 'M' and (resid 180 through 331 )
55X-RAY DIFFRACTION55chain 'N' and (resid 2 through 46 )
56X-RAY DIFFRACTION56chain 'N' and (resid 47 through 84 )
57X-RAY DIFFRACTION57chain 'N' and (resid 85 through 179 )
58X-RAY DIFFRACTION58chain 'N' and (resid 180 through 199 )
59X-RAY DIFFRACTION59chain 'N' and (resid 200 through 254 )
60X-RAY DIFFRACTION60chain 'N' and (resid 255 through 303 )
61X-RAY DIFFRACTION61chain 'N' and (resid 304 through 334 )
62X-RAY DIFFRACTION62chain 'O' and (resid 1 through 84 )
63X-RAY DIFFRACTION63chain 'O' and (resid 85 through 150 )
64X-RAY DIFFRACTION64chain 'O' and (resid 151 through 334 )
65X-RAY DIFFRACTION65chain 'P' and (resid 2 through 46 )
66X-RAY DIFFRACTION66chain 'P' and (resid 47 through 67 )
67X-RAY DIFFRACTION67chain 'P' and (resid 68 through 84 )
68X-RAY DIFFRACTION68chain 'P' and (resid 85 through 150 )
69X-RAY DIFFRACTION69chain 'P' and (resid 151 through 227 )
70X-RAY DIFFRACTION70chain 'P' and (resid 228 through 334 )
71X-RAY DIFFRACTION71chain 'Q' and (resid 2 through 46 )
72X-RAY DIFFRACTION72chain 'Q' and (resid 47 through 129 )
73X-RAY DIFFRACTION73chain 'Q' and (resid 130 through 179 )
74X-RAY DIFFRACTION74chain 'Q' and (resid 180 through 227 )
75X-RAY DIFFRACTION75chain 'Q' and (resid 228 through 334 )
76X-RAY DIFFRACTION76chain 'R' and (resid 1 through 33 )
77X-RAY DIFFRACTION77chain 'R' and (resid 34 through 84 )
78X-RAY DIFFRACTION78chain 'R' and (resid 85 through 150 )
79X-RAY DIFFRACTION79chain 'R' and (resid 151 through 303 )
80X-RAY DIFFRACTION80chain 'R' and (resid 304 through 333 )
81X-RAY DIFFRACTION81chain 'S' and (resid 2 through 46 )
82X-RAY DIFFRACTION82chain 'S' and (resid 47 through 84 )
83X-RAY DIFFRACTION83chain 'S' and (resid 85 through 150 )
84X-RAY DIFFRACTION84chain 'S' and (resid 151 through 254 )
85X-RAY DIFFRACTION85chain 'S' and (resid 255 through 303 )
86X-RAY DIFFRACTION86chain 'S' and (resid 304 through 334 )
87X-RAY DIFFRACTION87chain 'T' and (resid 1 through 67 )
88X-RAY DIFFRACTION88chain 'T' and (resid 68 through 129 )
89X-RAY DIFFRACTION89chain 'T' and (resid 130 through 179 )
90X-RAY DIFFRACTION90chain 'T' and (resid 180 through 199 )
91X-RAY DIFFRACTION91chain 'T' and (resid 200 through 227 )
92X-RAY DIFFRACTION92chain 'T' and (resid 228 through 303 )
93X-RAY DIFFRACTION93chain 'T' and (resid 304 through 334 )

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