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- PDB-9unz: Crystal structure of the V165A/S219E/A225P mutant of alanine dehy... -

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Basic information

Entry
Database: PDB / ID: 9unz
TitleCrystal structure of the V165A/S219E/A225P mutant of alanine dehyrogenase from Geobacillus stearothermophilus in complex with nicotinamide cytosine dinucleotide
ComponentsAlanine dehydrogenase
KeywordsOXIDOREDUCTASE / Non-natural cofactor / amino acid dehydrogenation
Function / homology
Function and homology information


alanine dehydrogenase / L-alanine dehydrogenase (NAD+) activity / L-alanine catabolic process / nucleotide binding / plasma membrane
Similarity search - Function
Alanine dehydrogenase / Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 / Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. / Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 / Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. / Alanine dehydrogenase/PNT, C-terminal domain / Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal / Alanine dehydrogenase/PNT, N-terminal domain / Alanine dehydrogenase/PNT, C-terminal domain / Alanine dehydrogenase/PNT, N-terminal domain ...Alanine dehydrogenase / Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 / Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. / Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 / Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. / Alanine dehydrogenase/PNT, C-terminal domain / Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal / Alanine dehydrogenase/PNT, N-terminal domain / Alanine dehydrogenase/PNT, C-terminal domain / Alanine dehydrogenase/PNT, N-terminal domain / Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain / NAD(P)-binding domain superfamily
Similarity search - Domain/homology
: / Alanine dehydrogenase
Similarity search - Component
Biological speciesGeobacillus stearothermophilus (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.56 Å
AuthorsHu, Y. / Guo, X. / Wang, X. / Zhao, Z.
Funding support China, 1items
OrganizationGrant numberCountry
Ministry of Science and Technology (MoST, China)2019YFA0904901 China
CitationJournal: To Be Published
Title: Non-natural cofactor and formate-driven L-Alanine production
Authors: Hu, Y. / Guo, X. / Wang, X. / Zhao, Z.
History
DepositionApr 24, 2025Deposition site: PDBJ / Processing site: PDBC
Revision 1.0Apr 29, 2026Provider: repository / Type: Initial release
Revision 1.1Jun 3, 2026Group: Data collection / Category: reflns / reflns_shell
Item: _reflns.number_obs / _reflns.pdbx_Rmerge_I_obs / _reflns_shell.Rmerge_I_obs

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Alanine dehydrogenase
B: Alanine dehydrogenase
C: Alanine dehydrogenase
D: Alanine dehydrogenase
E: Alanine dehydrogenase
F: Alanine dehydrogenase
G: Alanine dehydrogenase
H: Alanine dehydrogenase
I: Alanine dehydrogenase
J: Alanine dehydrogenase
K: Alanine dehydrogenase
L: Alanine dehydrogenase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)481,09924
Polymers473,41412
Non-polymers7,68512
Water12,412689
1
A: Alanine dehydrogenase
B: Alanine dehydrogenase
C: Alanine dehydrogenase
D: Alanine dehydrogenase
E: Alanine dehydrogenase
F: Alanine dehydrogenase
G: Alanine dehydrogenase
H: Alanine dehydrogenase
I: Alanine dehydrogenase
J: Alanine dehydrogenase
K: Alanine dehydrogenase
L: Alanine dehydrogenase
hetero molecules

A: Alanine dehydrogenase
B: Alanine dehydrogenase
C: Alanine dehydrogenase
D: Alanine dehydrogenase
E: Alanine dehydrogenase
F: Alanine dehydrogenase
G: Alanine dehydrogenase
H: Alanine dehydrogenase
I: Alanine dehydrogenase
J: Alanine dehydrogenase
K: Alanine dehydrogenase
L: Alanine dehydrogenase
hetero molecules

A: Alanine dehydrogenase
B: Alanine dehydrogenase
C: Alanine dehydrogenase
D: Alanine dehydrogenase
E: Alanine dehydrogenase
F: Alanine dehydrogenase
G: Alanine dehydrogenase
H: Alanine dehydrogenase
I: Alanine dehydrogenase
J: Alanine dehydrogenase
K: Alanine dehydrogenase
L: Alanine dehydrogenase
hetero molecules

A: Alanine dehydrogenase
B: Alanine dehydrogenase
C: Alanine dehydrogenase
D: Alanine dehydrogenase
E: Alanine dehydrogenase
F: Alanine dehydrogenase
G: Alanine dehydrogenase
H: Alanine dehydrogenase
I: Alanine dehydrogenase
J: Alanine dehydrogenase
K: Alanine dehydrogenase
L: Alanine dehydrogenase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)1,924,39496
Polymers1,893,65548
Non-polymers30,74048
Water86548
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
point symmetry operation1_556x,y,z+11
point symmetry operation2_446-x-1,y-1/2,-z+11
point symmetry operation2_456-x-1,y+1/2,-z+11
Buried area19010 Å2
ΔGint-58 kcal/mol
Surface area75020 Å2
MethodPISA
Unit cell
Length a, b, c (Å)89.441, 155.752, 178.091
Angle α, β, γ (deg.)90.000, 98.245, 90.000
Int Tables number4
Space group name H-MP1211
Space group name HallP2yb

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Components

#1: Protein
Alanine dehydrogenase / AlaDH


Mass: 39451.141 Da / Num. of mol.: 12 / Mutation: A225P, V165A, S219E
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Geobacillus stearothermophilus (bacteria)
Gene: alaD / Production host: Escherichia coli (E. coli) / References: UniProt: A8QVZ6, alanine dehydrogenase
#2: Chemical
ChemComp-A1EP0 / [[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate


Mass: 640.408 Da / Num. of mol.: 12 / Source method: obtained synthetically / Formula: C20H28N5O15P2 / Feature type: SUBJECT OF INVESTIGATION
#3: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 689 / Source method: isolated from a natural source / Formula: H2O
Has ligand of interestY
Has protein modificationN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.59 Å3/Da / Density % sol: 52.57 %
Crystal growTemperature: 291 K / Method: vapor diffusion, hanging drop
Details: Index H10: 0.2 M tri-Sodium Citrate dihydrate,20% w/v Polyethylene Glycol 3350

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: SSRF / Beamline: BL10U2 / Wavelength: 0.97918 Å
DetectorType: DECTRIS EIGER X 16M / Detector: PIXEL / Date: Sep 11, 2024
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97918 Å / Relative weight: 1
ReflectionResolution: 2.56→46.72 Å / Num. obs: 152484 / % possible obs: 97.7 % / Redundancy: 5.3 % / CC1/2: 0.993 / CC star: 0.998 / Rmerge(I) obs: 0.147 / Net I/σ(I): 10.74
Reflection shellResolution: 2.56→2.651 Å / Redundancy: 5.5 % / Rmerge(I) obs: 0.957 / Num. unique obs: 15160 / CC1/2: 0.993 / CC star: 0.948 / % possible all: 97.81

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Processing

Software
NameVersionClassification
PHENIX1.15.1_3469refinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.56→46 Å / SU ML: 0.3408 / Cross valid method: THROUGHOUT / σ(F): 1.33 / Phase error: 25.2814
Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
RfactorNum. reflection% reflectionSelection details
Rfree0.2443 7567 4.99 %RANDOM
Rwork0.1932 143967 --
obs0.1958 151534 97.72 %-
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Displacement parametersBiso mean: 41.97 Å2
Refinement stepCycle: LAST / Resolution: 2.56→46 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms33180 0 504 689 34373
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.002534308
X-RAY DIFFRACTIONf_angle_d0.511446764
X-RAY DIFFRACTIONf_chiral_restr0.04465604
X-RAY DIFFRACTIONf_plane_restr0.0045976
X-RAY DIFFRACTIONf_dihedral_angle_d9.865620664
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.56-2.590.3632630.29014711X-RAY DIFFRACTION98.09
2.59-2.620.36062160.27334875X-RAY DIFFRACTION97.7
2.62-2.650.30072370.25924772X-RAY DIFFRACTION97.68
2.65-2.690.3122520.24674802X-RAY DIFFRACTION98.35
2.69-2.720.29492630.24654852X-RAY DIFFRACTION98.61
2.72-2.760.30552410.2494811X-RAY DIFFRACTION98.63
2.76-2.80.30372310.23914869X-RAY DIFFRACTION98.53
2.8-2.840.27282530.23974818X-RAY DIFFRACTION98.62
2.84-2.880.28672690.23264829X-RAY DIFFRACTION98.42
2.88-2.930.2972500.23514811X-RAY DIFFRACTION98.73
2.93-2.980.29672840.22924830X-RAY DIFFRACTION98.65
2.98-3.040.31272250.22854813X-RAY DIFFRACTION98.34
3.04-3.090.31512580.23024800X-RAY DIFFRACTION98.21
3.09-3.160.28022630.22064845X-RAY DIFFRACTION98.8
3.16-3.230.26492750.22474786X-RAY DIFFRACTION98.52
3.23-3.30.29072600.22414851X-RAY DIFFRACTION98.27
3.3-3.380.2972530.2234799X-RAY DIFFRACTION98
3.38-3.470.28042430.21424751X-RAY DIFFRACTION96.52
3.47-3.580.25042480.21234682X-RAY DIFFRACTION95.49
3.58-3.690.24212460.20414686X-RAY DIFFRACTION95.58
3.69-3.820.2262560.18984704X-RAY DIFFRACTION96.22
3.82-3.980.23292510.17724835X-RAY DIFFRACTION98.45
3.98-4.160.21822440.16094836X-RAY DIFFRACTION98.32
4.16-4.380.19032490.15034859X-RAY DIFFRACTION98.33
4.38-4.650.19072600.14044827X-RAY DIFFRACTION98.41
4.65-5.010.19222860.14374829X-RAY DIFFRACTION98.33
5.01-5.510.21812580.16554826X-RAY DIFFRACTION98.01
5.51-6.310.20952480.17184837X-RAY DIFFRACTION98
6.31-7.940.18272620.15344833X-RAY DIFFRACTION97.42
7.94-460.16952230.13344588X-RAY DIFFRACTION90.6
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
11.16203859844-1.52733961952-0.5706179044332.079382570750.6771457521541.20753748763-0.748919218445-0.6550949702870.6431346988461.684344720420.653489880978-0.114787153791-0.786300449424-0.408762795094-0.2580356643031.622188065690.64026446691-0.1250020163940.382631208485-0.4646888303940.460142740851-12.529805996449.028175313838.7860890162
20.376263518651-0.516290724068-0.1278118997440.7353241389680.269610085191.06762748437-0.496444420871-0.3762808355530.5123617489891.003740811550.293371300292-0.434417085004-0.733798634488-0.122921783672-0.1097686377811.67988536420.366559384497-0.4196276624830.636416093348-0.3607507626270.374237380657-1.1434610145538.95742796245.6155202847
31.9631253459-0.306202622461-0.1270190824731.91927788402-0.9998262755191.99041826245-0.133195379178-0.1136960419190.09678321444520.1049216940610.0913255502656-0.203942297186-0.1188967684070.06740394899060.04008377617830.184231630237-0.0158211518848-0.05968291767570.225219784112-0.02960593770460.238926075946-2.0371355932921.235024787920.7429454805
41.50752490234-0.5206426453110.5572763635671.858186871420.08244070184982.47328839411-0.606946586923-0.5610457754380.4959022650441.332943779920.454786926501-0.547971484527-0.217063680406-0.2539255408820.0854990587730.8900726079930.237723522358-0.162926642190.419115912106-0.1361166317480.34857676944-3.1051649157332.765343076738.2757403392
50.5864750619620.4257198066620.3263605542690.6799458587160.2199344253551.35434268843-0.1029348943030.205196278026-0.153063451003-0.233294348253-0.0010144710820.1522343378540.9935938326790.122399110696-0.1391457262760.9565948418220.3416600634930.02020908943030.3440737055090.07877692138840.414591097221-56.716102909449.067751009753.6092543267
60.4049362649310.0894106877410.3860984074221.020471810380.5870687671581.534810987590.2611603763650.100876035465-0.0666377219532-0.333066303481-0.190890327045-0.04468427960410.788340709670.588551313139-0.03653071990280.8652672472110.4140082475010.05373814451310.4260832296180.004503923662740.397514535873-49.325483974755.725678625253.4120964082
70.6838445035280.08092054246450.05816100518690.773947168588-0.5030381808152.14794352040.03870649902110.0364257033841-0.0510965867433-0.0189872361856-0.115568864154-0.07907714926110.09318050261370.3485656739020.07637061012560.2957077904660.08796640479990.03983227330340.3345110315550.08236123910550.332622728257-48.256063253976.256516880976.3218227962
80.0434605685317-0.0949794928707-0.07667460618620.1267055130460.01122261233252.13387404923-0.2690794368010.0627486333052-0.32402074334-0.0313371341635-0.152875199812-0.2540430811480.07586020325920.5953791984930.1537949356680.4393388959280.2548880506180.1398080117910.5349950183220.04811933092630.534163792855-39.466529976967.477991313370.4275613751
91.56120728753-0.09590404455261.230424933321.24681082881-0.1679724422541.56807157792-0.0894877386946-0.14507073539-0.394416454751-0.007227217917230.01844413178080.04482011995070.3136415990670.2060127226490.07227551513430.5172504469320.2179161229550.1544101349240.3762743573280.1015428955140.431281742688-46.937064057459.565942096871.7745533175
101.542649979210.2935513000740.1125858400632.270428518171.36376597230.8250368596770.2372273400750.2699038467080.1823066807240.0111755992353-0.404150419070.1658432080230.390015905140.01118883398240.06575353550040.70213839320.187389880072-0.03477785279330.3573666876890.02929918640990.391094774935-60.923010558760.391705657350.3362244713
115.378009320012.153422843420.5463042077110.939126132294-0.1161681753441.52144774069-0.1506614693880.2212065936480.281189363297-0.2779707858780.1663167428070.414707650614-0.0522057140667-0.1318338973-0.07189054239450.9970257320450.2389422378-0.08125930158710.3287496002220.04765967142030.314473370188-58.742652434558.346358984239.7673157035
125.73018217902-0.148478314343.515852581014.63572468593-1.741279786213.103033583490.2099344063050.426519101599-0.171685222516-0.2103753293680.131805911688-0.1527433526950.2793265285870.411615713074-0.07479267855910.9222904767460.310996041494-0.06760463274170.7391210660820.1652814622470.389262358279-52.788735705262.599558201238.0789757008
132.50530257285-0.764078065642-2.805378516195.5866893945-0.07559419477893.29960354011-0.09214513924870.04385112477540.1457624563680.02785220861960.1364788258190.4289568215810.301752619049-0.00646105905526-0.02643379015370.5883792252610.14082313995-0.0105649877610.57366926930.1925528177740.47465101569-53.609565911668.607918431443.2018897751
148.728477750660.252768007461.954227204225.98311278923-2.065134661311.60425385059-0.1418560341661.03060712191-0.68535546457-0.741883738626-0.0369144080817-0.281831203540.6832997384520.413789615040.1130879921320.8358984116150.3887144551040.1507827805750.790160505310.02720837017660.420909378671-41.700984760462.899156022942.2842470281
151.79116488214-0.5828447855450.04074650500110.190012463547-0.01228697687510.00159598540557-0.06181440958570.2596074764710.301297974965-0.8186732076990.235838469763-0.432115811067-0.01549605078470.127291446558-0.07376320615880.6884543258250.07739053091730.09744460159010.7256247174160.2133843599640.49142443773-38.998054780269.770221494447.416093311
161.27407857239-0.859776039105-0.3469689300312.58075885697-2.666918049614.345443137360.000556665983660.1458998191450.1671640528770.231952650391-0.171923167748-0.2116867932030.002572045850270.3313827180320.1556118825520.7500354905580.166053369867-0.03604155279460.95663135812-0.04912752360770.461896727276-33.661778786269.506923999947.4090433629
171.64408847319-0.520390350950.2965118659860.747539661662-0.6323574305670.695169309220.1606566604670.5420207175180.106793078886-0.4716205060530.2950213116770.0870108956974-0.3994104030930.372392924479-0.2210959705330.896014415673-0.0695305975651-0.02779003506770.940452761550.04937045401780.663236025081-44.59802930469.714057334236.1940845887
180.8842842738370.203656560604-0.2777743101441.47709089721-0.7445352673461.541249972750.03055602278840.0175731357657-0.0210106554044-0.0534107966338-0.03614575532350.5017216258090.252421729462-0.58031173055-0.02222635039510.296489297434-0.123073116324-0.004624787706010.352394392601-0.06976342309580.460102772873-71.6105191573-12.771259684265.7668043804
190.4219870569560.09259263791080.2964706920650.606850181924-0.0203194516261.70498643338-0.04545936664070.04299625569320.0203910857465-0.0187188478053-0.03995411474220.1000694049440.488713319191-0.05463141708380.09015068353650.370896853394-0.1121448739260.04591432918120.221236816968-0.03855150060050.27811621113-57.1181977817-19.843052122873.576009673
200.733723700342-0.0871450694023-0.03279453050250.6467447618960.5358225552121.26055699531-0.0747510205906-0.0684364177793-0.1264546586090.102420400769-0.0343529223762-0.1017063784130.3663713225750.04534580531110.08451774522320.423112594345-0.03077033698360.03102580191410.1713962988310.04316800507320.310854317296-42.8324056483-18.914844779789.3753772191
211.11748299223-0.007110712845770.1254066603320.884178838425-0.8123048608031.649836942220.09669524859660.139453198038-0.209008623070.0556348006316-0.1733493069030.08433144122370.554340639248-0.3667047600120.01808181779240.426230462877-0.1647319637820.006596301431790.248487379009-0.07464372895860.347734324167-57.7815043253-21.953722688581.5254960338
221.45758815061-1.949193156820.3217791335253.27520366308-0.27686002251.38226728590.01785926018620.2131246422260.103767660213-0.444288697111-0.05443420764-0.1940433883330.3830320189020.2297364410620.0332982371450.392381139557-0.08313324841180.04335277025760.2579327896510.02880777919240.344429793161-50.946117328-17.437616458355.9514848383
231.15645910993-0.9194682603840.02558475646011.03184207859-0.07504159490472.00040962222-0.1283748694570.320061709563-0.737540079755-0.0523098572313-0.139018733372-0.497692867951-0.1887850366220.4822048166450.1425715385260.16009765062-0.08654706294790.07926715977350.448069182452-0.1110632117330.77972166668513.360535188732.1458263934-12.8569285212
241.911825456390.0599313365947-0.3898383570230.411148021613-0.1531881505091.69220568278-0.2828942868740.498238878509-0.156877088987-0.154733315532-0.0336710747608-0.14004979342-0.039097871167-0.1116385822990.279101130790.286711464169-0.100245910845-0.008229740523020.3766896643410.04341150129890.461452586146-1.1345639648538.0762264823-16.3834560958
250.590723428050.3063792414520.100160504151.10656823309-0.1500561354871.86701916926-0.0499150892579-0.02746112799560.06362483556690.07965863801140.0183428218509-0.027505536421-0.0673203872019-0.07622634852860.03606843298410.1507012464650.017744623811-0.02173588108970.239719360161-0.002304393089560.355941479039-19.215217220835.26440603135.38856711057
260.835721653820.257216738344-0.3547708166880.3436032460720.5245252735142.52448139823-0.09990967044740.04230201935170.2479838543130.0400267743306-0.0328763763684-0.0669342701352-0.526811204468-0.06582434556520.131547618550.2593612700070.00844859883829-0.06287771990970.199565269921-0.01124602382550.386774392515-11.004997397647.61758753050.958324965555
272.073573519820.362307376935-0.8326823915581.309379801550.6929017036312.58035523414-0.2369888345790.346824445345-1.2461698328-0.2302397815750.00414478101606-0.3295742585850.2677140764050.314154255966-0.1470748347580.155857962502-0.02502545654670.07707372322620.448231623575-0.1817220384630.9424243374362.8587506693126.8365495287-10.966027022
283.395107847470.340023633957-0.8502003443413.952528531050.1590142588650.2289270651290.08396914721340.3015289154550.210981999225-0.085747361947-0.0735313012-0.138131717863-0.1398084547750.268216084903-0.2740064522230.476417871095-0.1284817972770.2227890640081.45256322181-0.3918975408760.7105499455672.5758157557529.6922320982-31.3074110886
290.1298789215680.395350735728-0.9876552310961.19005606002-2.974643172047.46182789613-0.03254748681390.327775047764-0.3498528946690.01334917863880.02458619367140.001933384406070.274681043970.253709519978-0.03667943513790.475007772219-0.1382924164220.008640697531090.874239138561-0.4592724361870.879977762912-3.4147219241126.3830110029-29.1497669074
301.7678077317-1.261451348170.08411704326710.950596373340.174563201631.292416039530.1442763193980.76481642387-0.216218397471-0.2919465211630.272635227497-0.0309424581729-0.06188463726340.0354006158276-0.2315663273020.379824807589-0.1476072653740.07748808729580.727692083511-0.1961672652440.482278042568-4.9237027747734.47999242-25.1678046158
311.638362239361.174148703141.725572800185.57056612713-0.0451768779592.17058831207-0.1049913806670.384305787253-0.380146130477-0.382730384791-0.0379564513091-0.167957613678-0.1874064095020.4430365636120.09066747838270.326122822038-0.0929133934135-0.04714999676970.9448366491770.09258194062440.617841098634-2.8740242961543.9898559918-29.6718551202
324.22192789569-1.3069956974-2.405898150093.42797798103-2.937850048865.853685563420.01427274096620.88044247135-0.0621038464689-0.728217678397-0.05069562806520.543617361144-0.0952825812056-0.5414926067760.006088394547440.418821443156-0.184269206783-0.08550255277920.530307299230.01120079468980.546734418781-10.786614167442.7890727116-22.7265776888
330.7043421104150.0482272711395-0.58897029960.00731517358317-0.06857738669994.142452892930.2467239096840.4895216569950.20725209699-0.437879698303-0.2097728075880.3396755568230.0792228310298-0.0336952433464-0.07270876622740.530660267137-0.037575818549-0.08787886948910.7775137988280.2239161987880.501074845458-9.436593311646.5220795315-26.3040412835
340.948559739779-0.657644171464-0.07792810934753.990316739250.8947407557440.4971831853450.1614238703590.156072934526-0.0672838816786-0.3806393742480.134776064527-0.319142087099-0.1081281033310.30557285521-0.1339331921810.5075604070080.0620207056481-0.06903688729951.60023119106-0.20681312010.569193110307-5.3022700169136.0350970865-35.9658593545
350.6552633791830.0230492925360.5832899924640.347923066615-0.3921961477451.880253597880.0237573411122-0.0683097518361-0.187943656313-0.00686521351154-0.0122355491501-0.08535746469770.114487507160.138322758691-0.02288834705180.1415232596660.01282243636760.003137375540590.2125492300040.004324761700770.238706733013-3.70048796692-7.2295995531127.2199861687
361.57259671753-0.298340088453-0.5693153409723.829506722160.8554892895021.08075499507-0.12515911882-0.3187987688440.0158590167890.2711601338910.08687222558340.01616658997780.1721277762210.008642810069750.05879217788780.197764023524-0.022942623987-0.02634769226450.3069499747110.03787930656060.202427496669-27.3486553615-8.1424138242721.254545625
375.336906832831.166471924952.642775113064.891604642520.7415272376065.744973548720.1015920296520.270307315553-0.2759203017570.130652882683-0.0712179221701-0.3284062506320.1634491270030.565297333806-0.02559880549430.1843509416390.01197016774160.01359717305740.2072422063890.04089517580410.248852264942-16.2696740767-19.478934809515.4826003248
380.3947597137060.167090791345-0.236055577420.71803800739-0.1871090844241.97359223202-0.118730401423-0.0869697381957-0.1649179847730.156519820183-0.089222824528-0.03208927291220.116587479022-0.09475136262630.218742393210.1468454157060.008342220938320.006931697920340.293229058410.03753959664760.295782059509-3.73477523843-4.6200782193542.2672083578
390.9176162782260.106720848568-0.4161324963171.49479932969-0.3119561896222.31701708603-0.224366872636-0.229918623669-0.4194503455350.123322295549-0.0203563917614-0.2343050916460.5622902928310.5123096862120.1935246672870.4162468425070.1658337110960.04212237789640.2765166106280.1043821091190.452838494002-12.8780500381-23.763248578981.5725781244
400.537770839281-0.168123806579-0.06008368168360.7642025535470.8383535097291.294826869140.0560893981522-0.06217808229110.0315846806044-0.00333656318897-0.08738916163060.006185839069190.01471411793720.1283934553050.03040916759010.274950695224-0.04004283101320.0327996558780.2233565471550.02949483155850.247314767592-27.12193914354.5930683542192.2142334154
413.430019892680.4534101705670.820977444232.57843613169-1.014048275973.54588485576-0.2992248605580.2587100763660.223676399104-0.299043539970.146452043868-0.167405862547-0.374559498530.5097291623610.08884767510360.293663309737-0.1149699760530.01420167402280.3386236274970.03928609265810.346369385981-17.017237817713.930892546589.7967254381
422.596421562050.414923581459-0.05297205535833.788019973020.2239051302011.69730636876-0.2444395415170.329875292886-0.354722109644-0.2598777367710.275643902137-0.5409862166330.4936155088741.23876824826-0.02931776567060.3311212966230.1445786687250.03954771730340.6368159576840.004615302433530.404631047571-9.908383185513.7696991882393.9534117679
431.35029880414-0.142127194173-0.1713630895090.5471034536220.1964678665021.61614649571-0.07169557774380.0666091141514-0.1184879260820.07748418713770.0214718620571-0.02237877846250.08238718933860.1325921099580.06472232291380.2472002926740.0523311068362-0.009965275135780.203963310890.05283440515830.229174836238-17.783780243-16.305206624171.1896705765
440.5763632236630.1523258134710.4147351368581.354607315361.249105750512.16034565992-0.0337491784102-0.157972825020.1566353500520.156239815411-0.0193155618289-0.08549634371380.1006444574630.2450654966160.05563083795750.331170351218-0.00715696277847-0.04458969482050.3537917708380.01918672379920.284914362663-0.1152214006586.80411902127-55.4010920815
454.552863722331.475891836880.623730739874.34695042463-0.5356886851222.707509678560.0724210826384-0.740037141956-0.195609267430.728260946017-0.184056473364-0.09902832300190.3577334907270.2551083324050.1271731999710.6803520946120.0929463120633-0.03321963251780.3575880989620.1065342443020.313052081742-0.179344855988-14.9188941019-59.2377745861
461.269691870510.00425685103845-0.1031966148381.823448534130.3327227115113.07964618671-0.0591670279385-0.330613742430.03448453458160.665450348946-0.2930011647090.07779448108430.182512147145-0.3973770026240.3865649514190.446511198305-0.0683893070056-0.04216173078180.405654098446-0.06155048247950.306749288296-4.549184455712.218829781-41.1702943653
472.146818781550.11156693165-1.271271166740.6055697919080.0974334081191.790422574140.2043207462030.2087608359030.315375005799-0.140254039222-0.0403270492488-0.112567583273-0.3810928636-0.0675163525303-0.09921263709870.3610109900720.0110567730370.009358084728230.1542625108570.02620590600720.283115933225-40.015549531524.684806012976.2873711527
482.79638407039-1.419314772040.8187465282034.845944622370.8719870496373.89425146598-0.05509588301890.6463857997350.232288699017-0.394906667138-0.122088510815-0.0649977768052-0.43562994355-0.3289382423460.1334854819350.3115264000840.033514806123-0.05907337181870.3809057958390.02714122572810.296482620145-62.404833002518.549622208275.8782877001
497.43077196821-2.13089946783-1.366828656232.65417093059-0.09172957354574.40158309446-0.5745425861650.4492120018980.0384850893390.2039907766460.03208317597180.0431795651796-0.8248212246010.4817325525680.4645341050780.6015195837590.0904885170049-0.09708651956950.3683696700880.08492362422990.305254815809-59.820763354230.674414154180.2959615505
501.73512351788-0.0364166894254-1.080876971891.793379745070.284669294162.23518977115-0.001928398477160.4940384125640.0461951403352-0.390374141926-0.0425832931845-0.181997091903-0.0306023784297-0.3050087571060.04627991048030.407947051418-0.017020346275-0.003501208643240.3235909216280.0481410564940.274617078558-32.106882622222.681176276862.558860415
510.5239182403330.513921178478-0.5080329435831.00949563878-0.8571462039491.098590457990.04678071065710.0177774030931-0.08785724207740.09331023646630.01639215541290.0273295487754-0.11123489021-0.153082239397-0.06395195709510.1537576763750.0315305144777-0.02176681321450.2942364539910.02265060900450.262960575509-45.579324963611.067575323228.1152337881
524.529920244710.04285537777590.2103511899633.294539085930.9013551053453.028525289260.157894264286-0.4532652123520.2127360183720.720635125918-0.04760857311220.241582455487-0.337393740398-0.0961341495379-0.1120653076770.3987203310670.05963519998990.03135365907660.300284330715-0.007349364551460.262646419897-42.271956032833.978302333625.7707141445
530.9024249878530.767638508667-0.9023775513050.911772309198-0.6998849112240.9701350445990.092703835305-0.160118594993-0.05811982526240.264218573188-0.055758661039-0.040407218668-0.2328964914540.15443291617-0.06347193674970.2141838846420.0135613944289-0.0156001822170.3829839062370.007804979707330.235182591406-47.071636319111.279552381837.8952662
540.117567399972-0.2561919698880.3162078193010.890580590147-0.4954401210530.6305781473870.0223684970841-0.1210620039310.0240059476397-0.008202375222450.0358622990342-0.00529642233291-0.021481046904-0.155389403235-0.06008500492460.139917174098-0.006133684522870.01576605958190.2847743367270.009861988104310.22070374607-42.606956414529.3836769948-6.92672252481
553.3322533727-0.632943907957-0.2534268037023.591767059420.7447139788723.53322151145-0.1591618098990.1519581840630.0370910989025-0.4771029667520.04227243658260.435683464548-0.145642312279-0.3836317712090.1015743487990.25249820745-0.054471752113-0.08581433574140.3519003961530.04010556639630.302450849065-49.29811387068.73319390513-3.08672282629
560.861371406177-0.008064192255220.3580460181770.8555880318620.1285397175961.09044011877-0.01935589427510.138561215241-0.0721037898729-0.1928696510280.0494077992283-0.1284764333620.05248334357770.0962876547535-0.02867644512320.179135363453-0.003797163312150.06952622809990.259676268544-0.03113156024090.266193832504-40.001216445934.57702366-21.8750659393
571.31071624979-0.113137841076-0.6408650302290.6372770563870.23571035381.109880857450.05749061820020.09861151205980.0531553160468-0.029264600384-0.07773923125750.178670810248-0.178863359769-0.2665369830120.01666409851620.3002578918450.0157751264087-0.01873362463450.232516398443-0.05225943351630.26969550849-37.839638952224.2677750203-67.9013669907
582.9775613576-0.7360728780741.049853893642.73283702049-0.1256660894682.159794866370.163466649616-0.5188638996640.3453360511570.01643213208-0.2403795068160.150349487271-0.201519875336-0.1888965105540.0678837313930.375367146224-0.01462211128010.04185610940360.23724763714-0.09600489071540.317980686265-17.832539613332.981831183-69.6679189107
590.6729719076380.108919425605-0.3138762403340.6844802291490.4814338436642.22960645804-0.0125370896744-0.132440532674-0.001491468798730.107895494009-0.136268170890.06180335564010.0447034372949-0.159989366860.162734518060.275471017682-0.02040193937020.03311789969420.287343530729-0.06583048407090.254632351602-45.110433553223.2112683144-53.6040377824
601.001540027830.2624928440240.8583176867680.902265885410.458635758171.94845444898-0.04218971646290.0578598679412-0.11013241055-0.236623615078-0.008412385596950.02522618389220.199582861324-0.0390823184490.05069008437650.273169092231-0.04195948611970.0408275908870.271592081382-0.03306128106680.216021908596-19.0360867471-6.94352387726-10.5820268355
612.08540997144-0.716002930114-1.485053700224.47189959783-1.241776646663.26829728507-0.09799053391750.535149191775-0.250018244747-0.271128504902-0.0987065088582-0.1195463233910.1498906270450.3267673239510.1425346133430.184503098007-0.01106969216340.04526621169110.424590645027-0.02488615325750.353256567812.37179372039-0.220440006889-4.85556994579
621.001177514770.522068887771.004101378381.162907074720.8382324818440.923491321358-0.2217939955250.504057999318-0.139711097338-0.4150122168320.07279687056460.00284891822136-0.2176940314230.2693530531990.120362615940.35065542415-0.0670525439380.06278366113950.456144371837-0.01663624167680.199192316855-17.5616306476-7.02146546462-20.2796174413
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'A' and (resid 1 through 80 )
2X-RAY DIFFRACTION2chain 'A' and (resid 81 through 120 )
3X-RAY DIFFRACTION3chain 'A' and (resid 121 through 260 )
4X-RAY DIFFRACTION4chain 'A' and (resid 261 through 371 )
5X-RAY DIFFRACTION5chain 'B' and (resid 1 through 40 )
6X-RAY DIFFRACTION6chain 'B' and (resid 41 through 140 )
7X-RAY DIFFRACTION7chain 'B' and (resid 141 through 260 )
8X-RAY DIFFRACTION8chain 'B' and (resid 261 through 280 )
9X-RAY DIFFRACTION9chain 'B' and (resid 281 through 313 )
10X-RAY DIFFRACTION10chain 'B' and (resid 314 through 323 )
11X-RAY DIFFRACTION11chain 'B' and (resid 324 through 328 )
12X-RAY DIFFRACTION12chain 'B' and (resid 329 through 333 )
13X-RAY DIFFRACTION13chain 'B' and (resid 334 through 343 )
14X-RAY DIFFRACTION14chain 'B' and (resid 344 through 348 )
15X-RAY DIFFRACTION15chain 'B' and (resid 349 through 358 )
16X-RAY DIFFRACTION16chain 'B' and (resid 359 through 363 )
17X-RAY DIFFRACTION17chain 'B' and (resid 364 through 371 )
18X-RAY DIFFRACTION18chain 'C' and (resid 1 through 80 )
19X-RAY DIFFRACTION19chain 'C' and (resid 81 through 160 )
20X-RAY DIFFRACTION20chain 'C' and (resid 161 through 260 )
21X-RAY DIFFRACTION21chain 'C' and (resid 261 through 320 )
22X-RAY DIFFRACTION22chain 'C' and (resid 321 through 371 )
23X-RAY DIFFRACTION23chain 'D' and (resid 1 through 80 )
24X-RAY DIFFRACTION24chain 'D' and (resid 81 through 140 )
25X-RAY DIFFRACTION25chain 'D' and (resid 141 through 240 )
26X-RAY DIFFRACTION26chain 'D' and (resid 241 through 300 )
27X-RAY DIFFRACTION27chain 'D' and (resid 301 through 326 )
28X-RAY DIFFRACTION28chain 'D' and (resid 327 through 331 )
29X-RAY DIFFRACTION29chain 'D' and (resid 332 through 336 )
30X-RAY DIFFRACTION30chain 'D' and (resid 337 through 346 )
31X-RAY DIFFRACTION31chain 'D' and (resid 347 through 351 )
32X-RAY DIFFRACTION32chain 'D' and (resid 352 through 356 )
33X-RAY DIFFRACTION33chain 'D' and (resid 357 through 366 )
34X-RAY DIFFRACTION34chain 'D' and (resid 367 through 371 )
35X-RAY DIFFRACTION35chain 'E' and (resid 1 through 200 )
36X-RAY DIFFRACTION36chain 'E' and (resid 201 through 280 )
37X-RAY DIFFRACTION37chain 'E' and (resid 281 through 300 )
38X-RAY DIFFRACTION38chain 'E' and (resid 301 through 371 )
39X-RAY DIFFRACTION39chain 'F' and (resid 1 through 120 )
40X-RAY DIFFRACTION40chain 'F' and (resid 121 through 220 )
41X-RAY DIFFRACTION41chain 'F' and (resid 221 through 260 )
42X-RAY DIFFRACTION42chain 'F' and (resid 261 through 300 )
43X-RAY DIFFRACTION43chain 'F' and (resid 301 through 371 )
44X-RAY DIFFRACTION44chain 'G' and (resid 1 through 220 )
45X-RAY DIFFRACTION45chain 'G' and (resid 221 through 300 )
46X-RAY DIFFRACTION46chain 'G' and (resid 301 through 371 )
47X-RAY DIFFRACTION47chain 'H' and (resid 1 through 220 )
48X-RAY DIFFRACTION48chain 'H' and (resid 221 through 280 )
49X-RAY DIFFRACTION49chain 'H' and (resid 281 through 300 )
50X-RAY DIFFRACTION50chain 'H' and (resid 301 through 371 )
51X-RAY DIFFRACTION51chain 'I' and (resid 1 through 220 )
52X-RAY DIFFRACTION52chain 'I' and (resid 221 through 280 )
53X-RAY DIFFRACTION53chain 'I' and (resid 281 through 371 )
54X-RAY DIFFRACTION54chain 'J' and (resid 1 through 220 )
55X-RAY DIFFRACTION55chain 'J' and (resid 221 through 300 )
56X-RAY DIFFRACTION56chain 'J' and (resid 301 through 371 )
57X-RAY DIFFRACTION57chain 'K' and (resid 1 through 220 )
58X-RAY DIFFRACTION58chain 'K' and (resid 221 through 300 )
59X-RAY DIFFRACTION59chain 'K' and (resid 301 through 371 )
60X-RAY DIFFRACTION60chain 'L' and (resid 1 through 220 )
61X-RAY DIFFRACTION61chain 'L' and (resid 221 through 280 )
62X-RAY DIFFRACTION62chain 'L' and (resid 281 through 371 )

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About Yorodumi

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