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Open data
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Basic information
| Entry | Database: PDB / ID: 9uen | ||||||||||||||||||||||||
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| Title | Cryo-EM structure of coccolithophore photosystem I | ||||||||||||||||||||||||
Components |
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Keywords | PHOTOSYNTHESIS / Coccolithophore / Photosystem I / evolution | ||||||||||||||||||||||||
| Function / homology | Function and homology informationthylakoid membrane / photosynthesis, light harvesting / photosystem I reaction center / photosystem I / photosynthetic electron transport in photosystem I / photosystem I / chlorophyll binding / chloroplast thylakoid membrane / photosynthesis / chloroplast ...thylakoid membrane / photosynthesis, light harvesting / photosystem I reaction center / photosystem I / photosynthetic electron transport in photosystem I / photosystem I / chlorophyll binding / chloroplast thylakoid membrane / photosynthesis / chloroplast / 4 iron, 4 sulfur cluster binding / electron transfer activity / oxidoreductase activity / magnesium ion binding / metal ion binding / membrane Similarity search - Function | ||||||||||||||||||||||||
| Biological species | Emiliania huxleyi (eukaryote) | ||||||||||||||||||||||||
| Method | ELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 3.1 Å | ||||||||||||||||||||||||
Authors | Zhao, L.S. / Sun, X.M. / Li, K. / Zhang, Y.Z. / Liu, L.N. | ||||||||||||||||||||||||
| Funding support | China, 1items
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Citation | Journal: To Be PublishedTitle: Cryo-EM structure of coccolithophore photosystem I Authors: Zhao, L.S. / Sun, X.M. / Li, K. / Zhang, Y.Z. / Liu, L.N. | ||||||||||||||||||||||||
| History |
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 9uen.cif.gz | 2.4 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb9uen.ent.gz | Display | PDB format | |
| PDBx/mmJSON format | 9uen.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 9uen_validation.pdf.gz | 39.5 MB | Display | wwPDB validaton report |
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| Full document | 9uen_full_validation.pdf.gz | 41.5 MB | Display | |
| Data in XML | 9uen_validation.xml.gz | 486.5 KB | Display | |
| Data in CIF | 9uen_validation.cif.gz | 589.3 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ue/9uen ftp://data.pdbj.org/pub/pdb/validation_reports/ue/9uen | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 64087MC M: map data used to model this data C: citing same article ( |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Assembly
| Deposited unit | ![]()
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Components
-Light harvesting ... , 19 types, 28 molecules ACEFGHIJKMPWORTUXYZpuxqvtwyz
| #1: Protein | Mass: 21992.373 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1FED1 | ||||||||||||||||||
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| #3: Protein | Mass: 22043.816 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: A0A6V2SE28 | ||||||||||||||||||
| #5: Protein | Mass: 22394.910 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: A0A7S3TXG5 | ||||||||||||||||||
| #6: Protein | Mass: 25430.328 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1DWS2 | ||||||||||||||||||
| #7: Protein | Mass: 20760.982 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1DY94 | ||||||||||||||||||
| #8: Protein | Mass: 21065.248 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: A0A7S3WIW7 | ||||||||||||||||||
| #9: Protein | Mass: 21042.486 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: A0A7S3TFW5 | ||||||||||||||||||
| #10: Protein | Mass: 21689.107 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: A0A7S3WZA0 | ||||||||||||||||||
| #11: Protein | Mass: 22109.350 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1B3D6 | ||||||||||||||||||
| #13: Protein | Mass: 23617.469 Da / Num. of mol.: 3 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1BTM8#15: Protein | Mass: 21835.316 Da / Num. of mol.: 3 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1DCN2#18: Protein | | Mass: 21708.004 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1ED82#20: Protein | | Mass: 27282.211 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1CMT6#21: Protein | | Mass: 26276.248 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1FP66#22: Protein | | Mass: 27517.436 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1CV07#35: Protein | Mass: 27307.240 Da / Num. of mol.: 3 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1EIA6#36: Protein | Mass: 28328.730 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1DAV6#38: Protein | Mass: 28110.125 Da / Num. of mol.: 3 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1CGG7#39: Protein | | Mass: 27669.822 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1EB65 |
-Protein , 11 types, 11 molecules BDLNQSVckor
| #2: Protein | Mass: 22929.465 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) |
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| #4: Protein | Mass: 27147.926 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) |
| #12: Protein | Mass: 24057.834 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) |
| #14: Protein | Mass: 23840.873 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) |
| #16: Protein | Mass: 19804.814 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) |
| #17: Protein | Mass: 26558.590 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) |
| #19: Protein | Mass: 12203.064 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1DLA7 |
| #25: Protein | Mass: 8809.169 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: Q4G3C1, photosystem I |
| #31: Protein | Mass: 11631.743 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: A0A7S3X4W4 |
| #34: Protein | Mass: 28691.213 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) |
| #37: Protein | Mass: 13621.712 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) |
-Photosystem I P700 chlorophyll a apoprotein ... , 2 types, 2 molecules ab
| #23: Protein | Mass: 83647.352 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: Q4G3F6, photosystem I |
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| #24: Protein | Mass: 82100.969 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: Q4G3F5, photosystem I |
-Photosystem I reaction center subunit ... , 7 types, 7 molecules defijlm
| #26: Protein | Mass: 15898.161 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: Q4G369 |
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| #27: Protein | Mass: 13501.674 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: R1EZZ6 |
| #28: Protein | Mass: 20000.166 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: Q4G3B9 |
| #29: Protein/peptide | Mass: 3971.760 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: Q4G373 |
| #30: Protein/peptide | Mass: 4539.402 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: Q4G3B8 |
| #32: Protein | Mass: 15488.802 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: Q4G3B5 |
| #33: Protein/peptide | Mass: 3213.874 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Emiliania huxleyi (eukaryote) / References: UniProt: Q4G371 |
-Sugars , 1 types, 1 molecules 
| #52: Sugar | ChemComp-DGD / |
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-Non-polymers , 12 types, 789 molecules 


















| #40: Chemical | ChemComp-CLA / #41: Chemical | ChemComp-KC2 / #42: Chemical | ChemComp-DD6 / ( #43: Chemical | ChemComp-LMG / #44: Chemical | ChemComp-A86 / ( #45: Chemical | ChemComp-LHG / #46: Chemical | ChemComp-SQD / #47: Chemical | ChemComp-A1EB1 / [( |
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Emiliania huxleyi (eukaryote)
China, 1items
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