PDB-9q6g: PYCR2 complexed with NAD+ and (2S)-2-hydroxy-3,3-dimethylbutanoic acid

ID or keywords:

Entry

Database: PDB / ID: 9q6g

Title

PYCR2 complexed with NAD+ and (2S)-2-hydroxy-3,3-dimethylbutanoic acid

Components

Pyrroline-5-carboxylate reductase 2

Keywords

OXIDOREDUCTASE / AMINO-ACID BIOSYNTHESIS / PROLINE BIOSYNTHESIS / BIOSYNTHESIS

Function / homology

Function and homology information

pyrroline-5-carboxylate reductase / pyrroline-5-carboxylate reductase activity / Glutamate and glutamine metabolism / L-glutamine catabolic process / L-proline biosynthetic process / L-glutamate catabolic process / cellular response to oxidative stress / mitochondrial matrix / mitochondrion / cytosol / cytoplasm
Similarity search - Function

Biological species

Homo sapiens (human)

Method

X-RAY DIFFRACTION /

SYNCHROTRON /

MOLECULAR REPLACEMENT / Resolution: 2.65 Å

Authors

Tanner, J.J. / Meeks, K.R.

Funding support

United States, 1items

Citation

Journal: Acs Chem.Biol. / Year: 2026
Title: Targeting a Unique Cysteine Residue to Achieve Isoform-Selective Inhibition of the Proline Biosynthetic Enzyme Pyrroline-5-Carboxylate Reductase 2.
Authors: Rossman, T.C. / Meeks, K.R. / Purohit, G. / Naldrett, M.J. / Tanner, J.J. / Becker, D.F.

History

Deposition	Aug 22, 2025	Deposition site: RCSB / Processing site: RCSB
Revision 1.0	May 20, 2026	Provider: repository / Type: Initial release
Revision 1.1	May 27, 2026	Group: Database references / Category: citation / citation_author Item: _citation.journal_volume / _citation.page_first ..._citation.journal_volume / _citation.page_first / _citation.page_last / _citation_author.identifier_ORCID
Revision 1.2	Sep 30, 2026	Group: Structure summary / Category: struct_keywords / Item: _struct_keywords.text

Structure viewer	Molecule: MolmilJmol/JSmol

-
Download

PDBx/mmCIF format	9q6g.cif.gz	468.2 KB	Display	PDBx/mmCIF format
PDB format	pdb9q6g.ent.gz	383.4 KB	Display	PDB format
PDBx/mmJSON format	9q6g.json.gz		Tree view	PDBx/mmJSON format
Others	Other downloads

-
Validation report

Arichive directory	https://data.pdbj.org/pub/pdb/validation_reports/q6/9q6g ftp://data.pdbj.org/pub/pdb/validation_reports/q6/9q6g	HTTPS FTP

-
Related structure data

Similar structure data	Similarity search - Function & homologyF&H Search Similarity search - FunctionF&H Search Similarity search - HomologyF&H Search

-
Links

PDB pages	PDBj / wwPDB / NCBI
Related items in Molecule of the Month	#111 - Mar 2009 Hydrogenase similarity (1) #228 - Dec 2018 Directed Evolution of Enzymes similarity (1) #127 - Jul 2010 Crystallins similarity (1)

Deposited unit

A: Pyrroline-5-carboxylate reductase 2

B: Pyrroline-5-carboxylate reductase 2

C: Pyrroline-5-carboxylate reductase 2

D: Pyrroline-5-carboxylate reductase 2

E: Pyrroline-5-carboxylate reductase 2

hetero molecules

172 kDa, 5 polymers
Search similar-shape structures of this assembly by Omokage search (details)

1

A: Pyrroline-5-carboxylate reductase 2

B: Pyrroline-5-carboxylate reductase 2

C: Pyrroline-5-carboxylate reductase 2

D: Pyrroline-5-carboxylate reductase 2

E: Pyrroline-5-carboxylate reductase 2

hetero molecules

A: Pyrroline-5-carboxylate reductase 2

B: Pyrroline-5-carboxylate reductase 2

C: Pyrroline-5-carboxylate reductase 2

D: Pyrroline-5-carboxylate reductase 2

E: Pyrroline-5-carboxylate reductase 2

hetero molecules

defined by author&software
344 kDa, 10 polymers
Search similar-shape structures of this assembly by Omokage search (details)

Unit cell

Length a, b, c (Å)	104.336, 109.936, 154.004
Angle α, β, γ (deg.)	90.00, 90.00, 90.00
Int Tables number	18
Space group name H-M	P2₁22₁

#1: Protein	Pyrroline-5-carboxylate reductase 2 / P5C reductase 2 / P5CR 2 Mass: 33621.801 Da / Num. of mol.: 5 / Mutation: K276Q Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: PYCR2 / Production host: Escherichia coli (E. coli) References: UniProt: Q96C36, pyrroline-5-carboxylate reductase
#2: Chemical	ChemComp-SO4 / SULFATE ION Mass: 96.063 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: SO₄
#3: Chemical	ChemComp-NAD / NICOTINAMIDE-ADENINE-DINUCLEOTIDE Mass: 663.425 Da / Num. of mol.: 5 / Source method: obtained synthetically / Formula: C₂₁H₂₇N₇O₁₄P₂ / Feature type: SUBJECT OF INVESTIGATION / Comment: NAD*YM
#4: Chemical	ChemComp-G8I / (2S)-2-hydroxy-3,3-dimethylbutanoic acid Mass: 132.158 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C₆H₁₂O₃ / Feature type: SUBJECT OF INVESTIGATION
#5: Water	ChemComp-HOH / water Mass: 18.015 Da / Num. of mol.: 9 / Source method: isolated from a natural source / Formula: H₂O
Has ligand of interest	Y
Has protein modification	Y

-
Experiment

Experiment	Method: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

Crystal	Density Matthews: 2.63 Å³/Da / Density % sol: 53.18 %
Crystal grow	Temperature: 293 K / Method: vapor diffusion, sitting drop Details: Resevoir contained 400 mM Li2SO4, 22% (w/v) PEG 3350, and 0.1 mM HEPES at pH 7.5. Enzyme solution contained 8 mM NAD+ and 10 mM 2S-Hydroxy-3,3-dimethylbutyric acid. Crystal was soaked in ...Details: Resevoir contained 400 mM Li2SO4, 22% (w/v) PEG 3350, and 0.1 mM HEPES at pH 7.5. Enzyme solution contained 8 mM NAD+ and 10 mM 2S-Hydroxy-3,3-dimethylbutyric acid. Crystal was soaked in cryobuffer containing 20% PEG 200.

Crystal

Density Matthews: 2.63 Å³/Da / Density % sol: 53.18 %

Crystal grow

Temperature: 293 K / Method: vapor diffusion, sitting drop
Details: Resevoir contained 400 mM Li2SO4, 22% (w/v) PEG 3350, and 0.1 mM HEPES at pH 7.5. Enzyme solution contained 8 mM NAD+ and 10 mM 2S-Hydroxy-3,3-dimethylbutyric acid. Crystal was soaked in ...

-
Data collection

Diffraction	Mean temperature: 100 K / Serial crystal experiment: N
Diffraction source	Source: SYNCHROTRON / Site: ALS / Beamline: 5.0.3 / Wavelength: 0.976 Å
Detector	Type: DECTRIS PILATUS3 2M / Detector: PIXEL / Date: Oct 26, 2024
Radiation	Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength	Wavelength: 0.976 Å / Relative weight: 1
Reflection	Resolution: 2.65→49.41 Å / Num. obs: 99172 / % possible obs: 100 % / Redundancy: 6.8 % / CC_1/2: 0.988 / R_merge(I) obs: 0.304 / R_pim(I) all: 0.126 / R_rim(I) all: 0.329 / Χ²: 1.03 / Net I/σ(I): 7.6
Reflection shell	Resolution: 2.65→2.73 Å / Redundancy: 7.1 % / R_merge(I) obs: 1.851 / Num. unique obs: 4479 / CC_1/2: 0.348 / R_pim(I) all: 0.746 / R_rim(I) all: 1.998 / Χ²: 1.01

-
Processing

Software

Name	Version	Classification
PHENIX	(1.21.2_5419: ???)	refinement
Aimless		data scaling
PDB_EXTRACT		data extraction
XDS		data reduction
PHASER	1.21.2-5419	phasing

Refinement

Method to determine structure:

MOLECULAR REPLACEMENT / Resolution: 2.65→48.63 Å / SU ML: 0.48 / Cross valid method: FREE R-VALUE / σ(F): 0.21 / Phase error: 34.1 / Stereochemistry target values: ML

	R_factor	Num. reflection	% reflection
R_free	0.2843	1777	1.79 %
R_work	0.2683	-	-
obs	0.2686	99172	99.74 %

Solvent computation

Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL

Refinement step

Cycle: LAST / Resolution: 2.65→48.63 Å

	Protein	Nucleic acid	Ligand	Solvent	Total
Num. atoms	8847	0	223	9	9079

Refine LS restraints

Refine-ID	Type	Dev ideal	Number
X-RAY DIFFRACTION	f_bond_d	0.002	9204
X-RAY DIFFRACTION	f_angle_d	0.595	12583
X-RAY DIFFRACTION	f_dihedral_angle_d	13.24	3189
X-RAY DIFFRACTION	f_chiral_restr	0.042	1509
X-RAY DIFFRACTION	f_plane_restr	0.006	1661

LS refinement shell

Resolution (Å)	R_factor R_free	Num. reflection R_free	R_factor R_work	Num. reflection R_work	Refine-ID	% reflection obs (%)
2.65-2.72	0.4261	126	0.377	7500	X-RAY DIFFRACTION	100
2.72-2.8	0.3752	148	0.3718	7515	X-RAY DIFFRACTION	100
2.8-2.89	0.3615	115	0.3578	7503	X-RAY DIFFRACTION	100
2.89-3	0.4	95	0.3545	7553	X-RAY DIFFRACTION	100
3-3.12	0.3672	146	0.3328	7458	X-RAY DIFFRACTION	100
3.12-3.26	0.3173	134	0.3084	7507	X-RAY DIFFRACTION	100
3.26-3.43	0.3286	101	0.2904	7532	X-RAY DIFFRACTION	99
3.43-3.64	0.2695	167	0.2839	7416	X-RAY DIFFRACTION	99
3.64-3.92	0.292	117	0.248	7529	X-RAY DIFFRACTION	100
3.93-4.32	0.257	156	0.2247	7491	X-RAY DIFFRACTION	100
4.32-4.94	0.258	166	0.2184	7429	X-RAY DIFFRACTION	100
4.94-6.23	0.2448	163	0.2523	7476	X-RAY DIFFRACTION	100
6.23-48.63	0.2157	143	0.2022	7486	X-RAY DIFFRACTION	100

Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

ID	L11 (°²)	L12 (°²)	L13 (°²)	L22 (°²)	L23 (°²)	L33 (°²)	S11 (Å °)	S12 (Å °)	S13 (Å °)	S21 (Å °)	S22 (Å °)	S23 (Å °)	S31 (Å °)	S32 (Å °)	S33 (Å °)	T11 (Å²)	T12 (Å²)	T13 (Å²)	T22 (Å²)	T23 (Å²)	T33 (Å²)	Origin x (Å)	Origin y (Å)	Origin z (Å)
1	2.8274	-0.6579	0.6231	2.1089	-0.9877	2.6322	0.1549	1.0771	-0.5348	-0.5641	0.0233	0.0778	1.0417	-0.4197	-0.1606	0.8533	0.0695	-0.1646	0.7897	-0.1536	0.6089	-5.8221	27.8453	-46.2356
2	0.6815	0.2936	-0.3419	1.0964	-0.3148	0.2007	0.0312	1.0808	-0.7877	-0.5899	0.0266	0.0783	1.0999	-0.328	-0.0865	1.213	0.0362	-0.3032	1.0181	-0.4108	0.8899	-6.7611	22.4348	-50.0027
3	0.6086	0.2507	0.7431	1.5312	-0.4922	1.354	0.0045	1.3954	-0.5777	-0.9123	0.0349	-0.1558	1.1319	-0.1964	-0.0018	1.355	0.1376	-0.1577	1.1973	-0.4064	0.7964	-0.5337	21.6544	-54.7331
4	2.7254	0.0922	-1.2371	2.2715	-0.67	1.2771	0.166	1.1882	-0.5531	-0.725	-0.1725	-0.3411	1.0269	0.2375	0.027	0.7457	0.2718	-0.088	0.7493	-0.1965	0.563	8.649	28.3498	-47.6961
5	1.2212	0.0687	-0.775	0.0058	-0.0424	0.4927	0.1339	0.9481	-0.2556	-0.5762	-0.189	-0.6325	0.7725	0.5871	0.0567	0.6942	0.3619	0.0345	0.9848	-0.133	0.4785	16.9042	33.5625	-48.5862
6	2.2959	0.2306	-0.6125	0.9702	-0.4567	1.6354	0.2941	0.3588	0.0467	-0.1197	-0.0745	-0.0058	0.5849	-0.2089	-0.1903	0.3146	-0.0707	-0.065	0.2695	0.0527	0.2674	-8.388	36.7904	-27.4932
7	2.1679	0.9161	0.525	2.7868	-0.9274	3.0253	0.2909	0.0384	-0.3592	-0.2362	-0.2687	-0.3878	0.7675	0.655	-0.0609	0.4503	0.0883	-0.105	0.2961	0.0343	0.3506	6.6218	30.4907	-22.2943
8	2.1106	-0.3887	0.4414	0.7539	-0.5723	0.8985	0.0069	0.0024	0.273	0.0928	0.0583	0.1668	0.0567	-0.3274	-0.1182	0.2611	-0.2057	-0.0647	0.8244	0.1811	0.4576	-38.9984	52.4308	-23.9527
9	2.2606	0.4547	-0.539	1.6242	0.145	0.7551	-0.0124	-0.3234	-0.0837	-0.0078	0.1731	0.3347	0.0215	-0.5951	-0.1597	0.4108	-0.2616	-0.0168	1.0033	0.2224	0.5904	-46.3231	43.3839	-18.7158
10	1.8414	-0.0573	0.2499	0.5536	-0.2146	0.2694	0.0581	0.0429	-0.1226	0.0055	0.1005	0.2799	0.3089	-0.4165	-0.0005	0.2725	-0.2626	-0.0219	0.6075	0.1124	0.3982	-29.5997	37.1945	-20.0067
11	2.4682	-0.2309	0.1377	1.0702	-0.5066	1.0092	0.2175	0.0845	-0.2562	-0.2419	-0.0614	0.2147	0.6819	-0.3209	-0.0888	0.6278	-0.1698	-0.084	0.2784	0.0493	0.2799	-11.7037	29.5636	-19.8395
12	1.4066	-0.291	-0.3502	3.3799	-0.9063	0.9055	0.2564	0.0326	-0.2842	-0.0281	-0.0914	-0.1494	0.7946	0.1485	-0.1868	2.1808	0.1165	-0.3304	0.5632	0.0265	0.6868	7.7597	-16.965	-19.177
13	0.1335	-0.0584	0.1801	1.5411	-0.2719	0.2677	0.2458	0.145	-0.157	-0.3028	-0.1193	0.0027	0.579	0.057	-0.1386	2.2612	0.2622	-0.3252	0.7074	0.1207	0.8758	13.6453	-20.9332	-17.4916
14	0.6795	-0.2736	-0.0154	1.0219	0.4465	0.7579	0.2137	0.2314	-0.2471	-0.2425	-0.0575	-0.2277	0.5211	0.217	-0.082	2.0458	0.5359	-0.1539	0.7104	-0.083	0.5862	20.8991	-8.3639	-28.1938
15	0.4	-0.095	0.1382	0.2891	-0.1336	0.0909	0.2501	0.2209	-0.2439	-0.3382	-0.1117	0.0434	0.7767	0.0105	-0.0608	1.8063	-0.0941	-0.2763	0.2263	-0.0937	0.3869	-4.7011	2.9391	-19.0741
16	0.2597	0.0046	0.5711	1.4377	-1.0488	2.0356	0.2464	0.1531	-0.1699	-0.4095	-0.1907	-0.1898	0.9033	0.3974	-0.026	1.3189	0.1898	-0.2112	0.3698	0.0584	0.3827	9.1506	11.8359	-16.1494
17	0.3373	0.13	-0.6954	0.0634	-0.2734	1.4766	0.1903	0.0516	-0.1364	-0.0971	-0.1804	0.2258	0.4331	-0.5634	-0.0005	1.7655	-0.2726	-0.4063	1.0593	-0.0488	0.9369	-28.9626	-0.1008	-22.0663
18	0.4998	0.1484	0.0225	1.1166	-1.5784	2.3806	0.1996	0.2014	-0.1275	-0.2938	-0.2292	0.4917	0.3142	-0.9584	0.0269	1.7891	-0.2552	-0.4868	1.1946	-0.084	0.91	-33.615	0.808	-27.1604
19	0.3685	-0.3355	-0.5095	0.9368	0.1088	0.9023	0.1656	0.3543	-0.4076	-0.177	-0.0436	0.5179	0.5292	-0.8831	-0.0678	1.5474	-0.4797	-0.4638	1.1645	-0.0104	1.0235	-40.9482	2.1841	-12.1378
20	0.0046	-0.0111	-0.0136	0.0864	-0.0001	0.058	0.0247	0.5676	-0.7467	-0.2877	0.0638	0.675	0.8828	-1.047	-0.0543	1.8426	-0.6178	-0.4047	1.4906	-0.0503	1.2958	-43.8886	-2.1876	-1.8126
21	0.2664	-0.0925	0.1791	1.5278	0.5259	0.671	0.1966	0.0891	-0.3492	0.0183	-0.2463	0.259	0.4033	-0.6044	0.0772	1.5233	-0.4621	-0.4067	0.6335	0.0373	0.59	-25.6358	-4.6536	-8.1566
22	0.1133	-0.1009	0.0889	0.3023	0.1899	0.3968	0.0647	0.0071	-0.1066	-0.1039	-0.0758	0.0653	0.472	-0.036	-0.1782	1.5036	0.03	-0.3028	0.2284	-0.0933	0.3447	-0.725	5.1047	-14.2767
23	0.7592	0.5355	-0.4071	1.5841	-0.6918	1.2622	0.1237	-0.0047	0.0342	0.0098	0.0841	0.348	0.3267	-0.3018	-0.2978	1.2002	-0.3717	-0.2026	0.3834	0.1243	0.4026	-19.4115	12.7065	-1.6348
24	2.9642	-0.5596	-1.1783	0.4789	-0.5627	2.1509	0.1817	0.7808	0.6797	-0.2688	-0.1116	-0.072	-0.3492	0.0111	-0.159	0.5195	0.0855	0.0514	0.6883	0.1958	0.7205	8.2447	67.4374	-22.4862
25	2.7224	-0.259	-0.7456	0.047	0.2341	1.3992	0.1132	0.8925	0.5815	-0.3483	-0.0825	-0.1878	-0.3891	0.1051	-0.1665	0.3998	0.0734	0.1761	0.8731	0.1429	0.6325	18.2441	62.9517	-26.815
26	1.552	0.1593	-0.3869	0.5564	-0.0017	0.9166	0.0889	0.0953	0.3449	-0.008	-0.1042	-0.1669	-0.1927	0.2924	-0.0733	-0.1113	-0.0227	-0.0108	0.3169	0.0565	0.4975	9.7858	56.7634	-4.9044
27	1.3486	-0.2303	0.9742	2.1026	0.4408	0.8824	0.0888	0.2931	-0.0788	-0.2367	-0.0585	-0.466	0.1063	0.4508	0.0015	0.1622	0.1442	-0.0982	0.4259	-0.0172	0.366	14.3486	42.9806	-8.2229

Refinement TLS group

ID	Refine-ID	Refine TLS-ID	Selection details
1	X-RAY DIFFRACTION	1	chain 'A' and (resid 1 through 21 )
2	X-RAY DIFFRACTION	2	chain 'A' and (resid 22 through 47 )
3	X-RAY DIFFRACTION	3	chain 'A' and (resid 48 through 61 )
4	X-RAY DIFFRACTION	4	chain 'A' and (resid 62 through 100 )
5	X-RAY DIFFRACTION	5	chain 'A' and (resid 101 through 116 )
6	X-RAY DIFFRACTION	6	chain 'A' and (resid 117 through 249 )
7	X-RAY DIFFRACTION	7	chain 'A' and (resid 250 through 273 )
8	X-RAY DIFFRACTION	8	chain 'B' and (resid 1 through 82 )
9	X-RAY DIFFRACTION	9	chain 'B' and (resid 83 through 100 )
10	X-RAY DIFFRACTION	10	chain 'B' and (resid 101 through 198 )
11	X-RAY DIFFRACTION	11	chain 'B' and (resid 199 through 273 )
12	X-RAY DIFFRACTION	12	chain 'C' and (resid 5 through 39 )
13	X-RAY DIFFRACTION	13	chain 'C' and (resid 40 through 61 )
14	X-RAY DIFFRACTION	14	chain 'C' and (resid 62 through 115 )
15	X-RAY DIFFRACTION	15	chain 'C' and (resid 116 through 249 )
16	X-RAY DIFFRACTION	16	chain 'C' and (resid 250 through 273 )
17	X-RAY DIFFRACTION	17	chain 'D' and (resid 5 through 21 )
18	X-RAY DIFFRACTION	18	chain 'D' and (resid 22 through 53 )
19	X-RAY DIFFRACTION	19	chain 'D' and (resid 54 through 100 )
20	X-RAY DIFFRACTION	20	chain 'D' and (resid 101 through 116 )
21	X-RAY DIFFRACTION	21	chain 'D' and (resid 117 through 176 )
22	X-RAY DIFFRACTION	22	chain 'D' and (resid 177 through 249 )
23	X-RAY DIFFRACTION	23	chain 'D' and (resid 250 through 273 )
24	X-RAY DIFFRACTION	24	chain 'E' and (resid 1 through 48 )
25	X-RAY DIFFRACTION	25	chain 'E' and (resid 49 through 82 )
26	X-RAY DIFFRACTION	26	chain 'E' and (resid 83 through 249 )
27	X-RAY DIFFRACTION	27	chain 'E' and (resid 250 through 273 )

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi

Thousand views of thousand structures

Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

+
Open data

-
Basic information

-
Structure visualization

-
Downloads & links

-
Download

-
Validation report

-
Related structure data

-
Links

-
Assembly

-
Components

-
Experimental details

-
Experiment

-
Sample preparation

-
Data collection

-
Processing

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi

-Movie

-Structure viewers

+Viewer log

-This page

-This web site

-Options

+Open data

-Basic information

-Structure visualization

-Downloads & links

-Download

-Validation report

-Related structure data

-Links

-Assembly

-Components

-Experimental details

-Experiment

-Sample preparation

-Data collection

-Processing

+About Yorodumi

-News

-Feb 9, 2022. New format data for meta-information of EMDB entries

-Aug 12, 2020. Covid-19 info

+Mar 5, 2020. Novel coronavirus structure data

+Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+Jul 12, 2017. Major update of PDB

-Yorodumi

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

+
Open data

-
Basic information

-
Structure visualization

-
Downloads & links

-
Download

-
Validation report

-
Related structure data

-
Links

-
Assembly

-
Components

-
Experimental details

-
Experiment

-
Sample preparation

-
Data collection

-
Processing

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi