| Entry | Database: PDB / ID: 9nyz |
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| Title | Crystal structure of DCKA/glutamate-bound GluN1/GluN2A agonist binding domains with UCM-101 |
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Components | (Glutamate receptor ionotropic, NMDA ...) x 2 |
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Keywords | MEMBRANE PROTEIN / ligand-gated ion channel allosteric modulation NMDA receptor synaptic protein neurotransmitter receptor |
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| Function / homology | Function and homology information
neurotransmitter receptor transport, plasma membrane to endosome / regulation of response to alcohol / response to ammonium ion / receptor recycling / response to environmental enrichment / directional locomotion / positive regulation of Schwann cell migration / pons maturation / regulation of cell communication / EPHB-mediated forward signaling ...neurotransmitter receptor transport, plasma membrane to endosome / regulation of response to alcohol / response to ammonium ion / receptor recycling / response to environmental enrichment / directional locomotion / positive regulation of Schwann cell migration / pons maturation / regulation of cell communication / EPHB-mediated forward signaling / Assembly and cell surface presentation of NMDA receptors / response to hydrogen sulfide / auditory behavior / olfactory learning / conditioned taste aversion / dendritic branch / regulation of respiratory gaseous exchange / response to other organism / regulation of ARF protein signal transduction / protein localization to postsynaptic membrane / cellular response to magnesium ion / serotonin metabolic process / transmitter-gated monoatomic ion channel activity / positive regulation of inhibitory postsynaptic potential / response to methylmercury / suckling behavior / response to manganese ion / response to glycine / response to carbohydrate / propylene metabolic process / sleep / dendritic spine organization / locomotion / cellular response to dsRNA / regulation of NMDA receptor activity / cellular response to lipid / RAF/MAP kinase cascade / regulation of monoatomic cation transmembrane transport / NMDA glutamate receptor activity / Synaptic adhesion-like molecules / voltage-gated monoatomic cation channel activity / response to glycoside / NMDA selective glutamate receptor complex / glutamate binding / ligand-gated sodium channel activity / neurotransmitter receptor complex / response to morphine / glutamate receptor signaling pathway / regulation of axonogenesis / neuromuscular process / calcium ion transmembrane import into cytosol / regulation of dendrite morphogenesis / protein heterotetramerization / male mating behavior / regulation of synapse assembly / spinal cord development / response to amine / glycine binding / cellular response to zinc ion / startle response / parallel fiber to Purkinje cell synapse / positive regulation of reactive oxygen species biosynthetic process / dopamine metabolic process / monoatomic cation transmembrane transport / response to lithium ion / positive regulation of calcium ion transport into cytosol / cellular response to glycine / modulation of excitatory postsynaptic potential / response to light stimulus / regulation of postsynaptic membrane potential / action potential / associative learning / conditioned place preference / excitatory synapse / positive regulation of dendritic spine maintenance / social behavior / monoatomic ion channel complex / monoatomic cation transport / regulation of neuronal synaptic plasticity / glutamate receptor binding / positive regulation of protein targeting to membrane / Unblocking of NMDA receptors, glutamate binding and activation / positive regulation of excitatory postsynaptic potential / long-term memory / neuron development / synaptic cleft / phosphatase binding / prepulse inhibition / positive regulation of synaptic transmission, glutamatergic / multicellular organismal response to stress / postsynaptic density, intracellular component / monoatomic cation channel activity / response to fungicide / calcium ion homeostasis / glutamate-gated receptor activity / regulation of neuron apoptotic process / cell adhesion molecule binding / cellular response to manganese ion / glutamate-gated calcium ion channel activity / presynaptic active zone membraneSimilarity search - Function Glutamate [NMDA] receptor, epsilon subunit, C-terminal / N-methyl D-aspartate receptor 2B3 C-terminus / : / : / Ionotropic glutamate receptor, metazoa / Ligated ion channel L-glutamate- and glycine-binding site / Ionotropic glutamate receptor, L-glutamate and glycine-binding domain / Ligated ion channel L-glutamate- and glycine-binding site / Ligand-gated ion channel / : ...Glutamate [NMDA] receptor, epsilon subunit, C-terminal / N-methyl D-aspartate receptor 2B3 C-terminus / : / : / Ionotropic glutamate receptor, metazoa / Ligated ion channel L-glutamate- and glycine-binding site / Ionotropic glutamate receptor, L-glutamate and glycine-binding domain / Ligated ion channel L-glutamate- and glycine-binding site / Ligand-gated ion channel / : / Ionotropic glutamate receptor / Eukaryotic homologues of bacterial periplasmic substrate binding proteins. / Receptor, ligand binding region / Receptor family ligand binding region / Periplasmic binding protein-like ISimilarity search - Domain/homology : / 5,7-DICHLORO-4-HYDROXYQUINOLINE-2-CARBOXYLIC ACID / GLUTAMIC ACID / Glutamate receptor ionotropic, NMDA 1 / Glutamate receptor ionotropic, NMDA 2ASimilarity search - Component |
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| Biological species |  Rattus norvegicus (Norway rat) |
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| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.71 Å |
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Authors | Lotti, J.S. / Syrenne, J.T. / Yates-Hansen, C.K. / McClelland, L.J. / Hansen, K.B. |
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| Funding support | United States, 2items | Organization | Grant number | Country |
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| National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) | R01NS097536 | United States | | National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | P30GM140963 | United States |
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Citation | Journal: To Be Published Title: Crystal structure of DCKA/glutamate-bound GluN1/GluN2A agonist binding domains with UCM-101 Authors: Hansen, K.B. |
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| History | | Deposition | Mar 30, 2025 | Deposition site: RCSB / Processing site: RCSB |
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| Revision 1.0 | Oct 29, 2025 | Provider: repository / Type: Initial release |
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