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- PDB-9mq4: Damaged 70S ribosome with PrfH bound -

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基本情報

登録情報
データベース: PDB / ID: 9mq4
タイトルDamaged 70S ribosome with PrfH bound
要素
  • (30S ribosomal protein ...) x 11
  • (50S ribosomal protein ...) x 16
  • (Large ribosomal subunit protein ...) x 15
  • (Small ribosomal subunit protein ...) x 9
  • 16S ribosomal RNA
  • 23S ribosomal RNA
  • 5S ribosomal RNA
  • P-tRNA, E-tRNA
  • Peptide chain release factor H
  • mRNA
キーワードRIBOSOME / CgPrfH / damaged ribosome / ribotoxin
機能・相同性
機能・相同性情報


negative regulation of cytoplasmic translational initiation / stringent response / transcriptional attenuation / endoribonuclease inhibitor activity / RNA-binding transcription regulator activity / translational termination / negative regulation of cytoplasmic translation / DnaA-L2 complex / translation repressor activity / negative regulation of translational initiation ...negative regulation of cytoplasmic translational initiation / stringent response / transcriptional attenuation / endoribonuclease inhibitor activity / RNA-binding transcription regulator activity / translational termination / negative regulation of cytoplasmic translation / DnaA-L2 complex / translation repressor activity / negative regulation of translational initiation / negative regulation of DNA-templated DNA replication initiation / mRNA regulatory element binding translation repressor activity / ribosome assembly / transcription antitermination / translational initiation / DNA-templated transcription termination / response to radiation / maintenance of translational fidelity / mRNA 5'-UTR binding / large ribosomal subunit / transferase activity / ribosome binding / ribosomal small subunit biogenesis / ribosomal small subunit assembly / small ribosomal subunit / 5S rRNA binding / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / small ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / tRNA binding / negative regulation of translation / rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex / response to antibiotic / negative regulation of DNA-templated transcription / mRNA binding / DNA binding / RNA binding / zinc ion binding / membrane / cytosol / cytoplasm
類似検索 - 分子機能
Ribosomal protein L10, eubacterial, conserved site / Ribosomal protein L10 signature. / Ribosomal protein L10 / : / Ribosomal protein S21, conserved site / Ribosomal protein S21 signature. / Ribosomal protein L11, bacterial-type / Ribosomal protein L25, short-form / Ribosomal protein S14, bacterial/plastid / Ribosomal protein L31 type A ...Ribosomal protein L10, eubacterial, conserved site / Ribosomal protein L10 signature. / Ribosomal protein L10 / : / Ribosomal protein S21, conserved site / Ribosomal protein S21 signature. / Ribosomal protein L11, bacterial-type / Ribosomal protein L25, short-form / Ribosomal protein S14, bacterial/plastid / Ribosomal protein L31 type A / Ribosomal protein S21 superfamily / Ribosomal protein S16, conserved site / Ribosomal protein S16 signature. / Ribosomal protein S21 / Ribosomal protein L31 signature. / Ribosomal protein L31 / Ribosomal protein L31 superfamily / Ribosomal protein L31 / Ribosomal protein S21 / Ribosomal protein L11, conserved site / Ribosomal protein L11 signature. / Ribosomal protein L10-like domain superfamily / Ribosomal protein L10P / Ribosomal protein L10 / : / Ribosomal protein L16 signature 1. / Ribosomal protein L21, conserved site / Ribosomal protein L21 signature. / Ribosomal protein L16 signature 2. / Ribosomal protein L16, conserved site / Ribosomal protein L6, conserved site / Ribosomal protein L6 signature 1. / : / Ribosomal protein L9 signature. / Ribosomal protein L9, bacteria/chloroplast / Ribosomal protein L9, C-terminal / Ribosomal protein L9, C-terminal domain / Ribosomal protein L9, C-terminal domain superfamily / Ribosomal protein L11, N-terminal / Ribosomal protein L11, N-terminal domain / Ribosomal protein L17 signature. / Ribosomal protein L11/L12 / Ribosomal protein L11, C-terminal / Ribosomal protein L11, C-terminal domain superfamily / Ribosomal protein L11/L12, N-terminal domain superfamily / Ribosomal protein L11/L12 / Ribosomal protein L11, RNA binding domain / Ribosomal L25p family / Ribosomal protein L25 / Ribosomal protein L36 signature. / Ribosomal protein L32p, bacterial type / Ribosomal protein L28/L24 superfamily / Ribosomal protein L25/Gln-tRNA synthetase, N-terminal / Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily / Ribosomal protein L9, N-terminal domain superfamily / Ribosomal protein L9 / Ribosomal protein L9, N-terminal / Ribosomal protein L9, N-terminal domain / Ribosomal protein L33, conserved site / Ribosomal protein L33 signature. / Ribosomal protein L35, conserved site / Ribosomal protein L35 signature. / Ribosomal protein L28 / Ribosomal protein L35, non-mitochondrial / : / Ribosomal protein L5, bacterial-type / Ribosomal protein L18, bacterial-type / : / Ribosomal protein S19, bacterial-type / Ribosomal protein S3, bacterial-type / Ribosomal protein L6, bacterial-type / Ribosomal protein S13, bacterial-type / Ribosomal protein S6, conserved site / Ribosomal protein S6 signature. / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein L9/RNase H1, N-terminal / Ribosomal protein S9, bacterial/plastid / Ribosomal protein S11, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein L36 / Ribosomal protein S4, bacterial-type / Ribosomal protein L36 superfamily / Ribosomal protein L36 / 30S ribosomal protein S17 / Ribosomal protein S5, bacterial-type / Ribosomal protein L19, conserved site / Ribosomal protein L19 signature. / Ribosomal protein L27, conserved site / Ribosomal protein L27 signature. / Ribosomal protein L20 signature. / Ribosomal protein L22, bacterial/chloroplast-type / Ribosomal protein L14P, bacterial-type / Ribosomal protein L34, conserved site / Ribosomal protein L34 signature. / Ribosomal protein S2, bacteria/mitochondria/plastid / Ribosomal protein L2, bacterial/organellar-type / Ribosomal protein L35 / Ribosomal protein L35 superfamily
類似検索 - ドメイン・相同性
: / : / : / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Small ribosomal subunit protein bS18 / Large ribosomal subunit protein bL36 / Small ribosomal subunit protein bS21 ...: / : / : / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Small ribosomal subunit protein bS18 / Large ribosomal subunit protein bL36 / Small ribosomal subunit protein bS21 / Large ribosomal subunit protein bL28 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS13 / Large ribosomal subunit protein bL20 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein bL34 / Large ribosomal subunit protein bL33 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS10 / Large ribosomal subunit protein uL23 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL24 / Small ribosomal subunit protein uS8 / Large ribosomal subunit protein uL30 / Small ribosomal subunit protein uS9 / Small ribosomal subunit protein uS15 / Small ribosomal subunit protein bS16 / Large ribosomal subunit protein bL32 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein bS20 / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein uS7 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein uL10 / Large ribosomal subunit protein uL11 / Large ribosomal subunit protein bL19 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein bL31 / Large ribosomal subunit protein bL35 / Large ribosomal subunit protein bL9 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein bL17 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein uL18 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL5 / Large ribosomal subunit protein bL25 / Large ribosomal subunit protein uL22 / Large ribosomal subunit protein bL21
類似検索 - 構成要素
生物種Escherichia coli (大腸菌)
Escherichia coli 0.1197 (大腸菌)
手法電子顕微鏡法 / 単粒子再構成法 / クライオ電子顕微鏡法 / 解像度: 2.78 Å
データ登録者Tian, Y. / Li, Q. / Jin, H. / Fatma, S. / Zeng, F. / Huang, R.H.
資金援助 米国, 中国, 4件
組織認可番号国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)GM145060 米国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)GM120764 米国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)GM120552 米国
National Natural Science Foundation of China (NSFC)32171200 中国
引用ジャーナル: bioRxiv / 年: 2025
タイトル: Molecular and structural basis of a subfamily of PrfH rescuing both the damaged and intact ribosomes stalled in translation.
著者: Yannan Tian / Qingrong Li / Shirin Fatma / Junyi Jiang / Hong Jin / Fuxing Zeng / Raven H Huang /
要旨: In bacteria, spontaneous mRNAs degradation and ribotoxin-induced RNA damage are two main biological events that lead to the stall of protein translation. The ubiquitous trans-translation system as ...In bacteria, spontaneous mRNAs degradation and ribotoxin-induced RNA damage are two main biological events that lead to the stall of protein translation. The ubiquitous trans-translation system as well as several alternative rescue factors (Arfs) are responsible for rescuing the stalled ribosomes caused by truncated mRNAs that lack the stop codons. To date, protein release factor homolog (PrfH) is the only factor known to rescue the stalled ribosome damaged by ribotoxins. Here we show that a subfamily of PrfH, exemplified by PrfH from (PrfH), rescues both types of stalled ribosomes described above. Our biochemical assays demonstrate that PrfH hydrolyzes the peptides attached to P-site tRNAs when in complex with both the damaged and intact ribosomes. Two cryo-EM structures of PrfH in complex with the damaged and intact 70S ribosomes revealed that PrfH employs two different regions of the protein to recognize two different stalled ribosomes to orient the GGQ motif for peptide hydrolysis. Thus, using a combination of bioinformatic, biochemical, and structural characterization described here, we have uncovered a family of ribosome rescue factors that possesses dual activities to resolve two distinct stalled protein translation in bacteria.
履歴
登録2025年1月1日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02025年2月5日Provider: repository / タイプ: Initial release
改定 1.02025年2月5日Data content type: EM metadata / Data content type: EM metadata / Provider: repository / タイプ: Initial release
改定 1.02025年2月5日Data content type: FSC / Data content type: FSC / Provider: repository / タイプ: Initial release
改定 1.02025年2月5日Data content type: Half map / Part number: 1 / Data content type: Half map / Provider: repository / タイプ: Initial release
改定 1.02025年2月5日Data content type: Half map / Part number: 2 / Data content type: Half map / Provider: repository / タイプ: Initial release
改定 1.02025年2月5日Data content type: Image / Data content type: Image / Provider: repository / タイプ: Initial release
改定 1.02025年2月5日Data content type: Primary map / Data content type: Primary map / Provider: repository / タイプ: Initial release
改定 1.12025年3月19日Group: Data collection / カテゴリ: chem_comp_atom / chem_comp_bond / em_admin
Item: _chem_comp_atom.atom_id / _chem_comp_atom.pdbx_aromatic_flag ..._chem_comp_atom.atom_id / _chem_comp_atom.pdbx_aromatic_flag / _chem_comp_bond.atom_id_1 / _chem_comp_bond.atom_id_2 / _chem_comp_bond.pdbx_aromatic_flag / _chem_comp_bond.value_order / _em_admin.last_update
改定 1.12025年3月19日Data content type: EM metadata / Data content type: EM metadata / Group: Experimental summary / Data content type: EM metadata / カテゴリ: em_admin / Data content type: EM metadata / Item: _em_admin.last_update

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

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集合体

登録構造単位
1: 23S ribosomal RNA
2: 16S ribosomal RNA
4: 5S ribosomal RNA
5: P-tRNA, E-tRNA
6: P-tRNA, E-tRNA
7: mRNA
A: Peptide chain release factor H
B: 50S ribosomal protein L2
C: 50S ribosomal protein L3
D: Large ribosomal subunit protein uL4
E: Large ribosomal subunit protein uL5
F: Large ribosomal subunit protein uL6
G: Large ribosomal subunit protein bL9
H: 50S ribosomal protein L10
I: 50S ribosomal protein L11
J: Large ribosomal subunit protein uL13
K: Large ribosomal subunit protein uL14
L: Large ribosomal subunit protein uL15
M: 50S ribosomal protein L16
N: Large ribosomal subunit protein bL17
O: Large ribosomal subunit protein uL18
P: Large ribosomal subunit protein bL19
Q: 50S ribosomal protein L20
R: Large ribosomal subunit protein bL21
S: Large ribosomal subunit protein uL22
T: 50S ribosomal protein L23
U: 50S ribosomal protein L24
V: Large ribosomal subunit protein bL25
W: Large ribosomal subunit protein bL27
X: 50S ribosomal protein L28
Y: Large ribosomal subunit protein uL29
Z: 50S ribosomal protein L30
a: 50S ribosomal protein L31
b: 50S ribosomal protein L32
c: 50S ribosomal protein L33
d: 50S ribosomal protein L34
e: 50S ribosomal protein L35
f: 50S ribosomal protein L36
g: 30S ribosomal protein S2
h: 30S ribosomal protein S3
i: 30S ribosomal protein S4
j: Small ribosomal subunit protein uS5
k: 30S ribosomal protein S6
l: 30S ribosomal protein S7
m: Small ribosomal subunit protein uS8
n: Small ribosomal subunit protein uS9
o: Small ribosomal subunit protein uS10
p: 30S ribosomal protein S11
q: Small ribosomal subunit protein uS12
r: 30S ribosomal protein S13
s: Small ribosomal subunit protein uS14
t: Small ribosomal subunit protein uS15
u: 30S ribosomal protein S16
v: Small ribosomal subunit protein uS17
w: 30S ribosomal protein S18
x: Small ribosomal subunit protein uS19
y: 30S ribosomal protein S20
z: 30S ribosomal protein S21
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)2,265,297499
ポリマ－2,254,49658
非ポリマー10,801441
水362
1


  • 登録構造と同一
  • 登録者・ソフトウェアが定義した集合体
  • 根拠: 電子顕微鏡法, not applicable
タイプ名称対称操作数
identity operation1_555x,y,z1

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要素

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RNA鎖 , 5種, 6分子 124567

#1: RNA鎖 23S ribosomal RNA


分子量: 941526.438 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌)
#2: RNA鎖 16S ribosomal RNA


分子量: 497404.969 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌) / 参照: GenBank: 1162858853
#3: RNA鎖 5S ribosomal RNA


分子量: 38790.090 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌) / 参照: GenBank: 1273279017
#4: RNA鎖 P-tRNA, E-tRNA


分子量: 24802.785 Da / 分子数: 2 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌) / 参照: GenBank: 1848934315
#5: RNA鎖 mRNA


分子量: 8132.956 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌)

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タンパク質 , 1種, 1分子 A

#6: タンパク質 Peptide chain release factor H


分子量: 26394.090 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌)

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50S ribosomal protein ... , 16種, 16分子 BCHIMQTUXZabcdef

#7: タンパク質 50S ribosomal protein L2 / Large ribosomal subunit protein uL2


分子量: 29923.619 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplB, b3317, JW3279 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P60422
#8: タンパク質 50S ribosomal protein L3 / Large ribosomal subunit protein uL3


分子量: 22277.535 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplC, b3320, JW3282 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P60438
#13: タンパク質 50S ribosomal protein L10 / 50S ribosomal protein L8 / Large ribosomal subunit protein uL10


分子量: 17736.596 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplJ, b3985, JW3948 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7J3
#14: タンパク質 50S ribosomal protein L11 / Large ribosomal subunit protein uL11


分子量: 14894.362 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplK, relC, b3983, JW3946 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7J7
#18: タンパク質 50S ribosomal protein L16 / Large ribosomal subunit protein uL16


分子量: 15312.269 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplP, b3313, JW3275 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0ADY7
#22: タンパク質 50S ribosomal protein L20


分子量: 13528.024 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplT / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: B7MAS6
#25: タンパク質 50S ribosomal protein L23


分子量: 11222.160 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rplW, rplW_1, A5U30_004552, A8502_004023, A9X72_02185, ACN81_25520, ACU57_20960, AM464_09220, AW118_24900, AWP47_12645, B6R15_004069, B6R31_004968, BANRA_04328, BCB93_004293, BER14_25190, ...遺伝子: rplW, rplW_1, A5U30_004552, A8502_004023, A9X72_02185, ACN81_25520, ACU57_20960, AM464_09220, AW118_24900, AWP47_12645, B6R15_004069, B6R31_004968, BANRA_04328, BCB93_004293, BER14_25190, BF481_004930, BG944_001133, BGM66_003593, BJI68_08675, BJJ90_02125, BK292_20505, BK383_24645, BKL28_004543, BTB68_004356, BTQ06_10690, BvCmsKKP061_03030, BvCmsSIP010_02685, BXT93_05475, C0P57_002668, C1Q91_004904, C2121_004162, C2M16_25405, C2R31_004633, C3F40_19720, C9E67_02725, C9Z68_22635, CA593_09650, CF22_004849, CG692_20185, CG704_20870, CG831_003649, CIG67_10675, CQ986_004881, CR538_02420, CR539_21900, CR628_001366, CTR35_003630, CV83915_02780, CY655_21320, D1912_09370, D3C88_31150, D3G36_23050, D4M65_20655, D4N09_20255, D9D43_22550, D9E49_05240, D9J61_16735, DD762_23630, DIV22_15175, DNQ45_03840, DNX30_25395, DQ87_004776, DS732_24345, DTL43_20915, DU321_12085, E4K51_21575, E5H86_24440, E6D34_21675, EAI46_07560, EC95NR1_02709, ECs4183, EEP55_004492, EIA08_24040, EIZ93_12385, EN85_004349, EPS76_07130, EPS97_20010, EWK56_25080, ExPECSC038_03640, F7F11_22640, F7N46_23925, F9407_19210, F9413_21150, F9461_25570, F9B07_24600, FEJ01_22430, FIJ20_21110, FJQ40_18390, FKO60_25720, FOI11_019175, FOI11_04005, FPI65_20390, FPS11_25345, FTV92_20630, FV293_22380, FVB16_04955, FWK02_12650, FZN31_02550, FZU14_21905, G3V95_19930, G3W53_21040, G4A38_21595, G4A47_20865, G5603_24670, G8C01_22470, G9448_16990, GAI89_24745, GAJ12_24635, GGB84_004451, GJ11_21470, GKF66_21630, GNW61_16715, GOP25_22790, GP711_23390, GP954_00860, GP965_04380, GP975_01270, GP979_01920, GQA06_03865, GQM04_10650, GQM13_25285, GQM21_11315, GQN34_23350, GQW07_21465, GRO95_20730, GRW05_09145, GRW24_04670, GRW56_00380, GRW57_03455, GTP92_23110, GUC01_21265, H0O72_19500, HCQ42_003932, HEP30_018720, HEP34_004754, HHH44_004519, HI055_004156, HIE29_005203, HJQ60_004995, HLX92_09990, HLZ50_22095, HMV95_19690, HV109_02105, HV146_21755, HV209_14630, HVW04_17450, HVW43_18585, HVY77_02090, HVZ29_19180, HX086_19490, HX136_02110, I0E88_004501, I6H00_20840, I6H02_12075, IFB95_004822, IUC12_004844, J0541_004413, J5U05_004071, JNP96_25390, KV259_004342, KV317_004314, KV371_004328, KV406_004321, KV449_004356, KV455_004319, KV463_004341, KV469_004334, KV499_004405, KV500_004292, NCTC10082_02823, NCTC10089_00486, NCTC10090_03511, NCTC10418_00674, NCTC10429_01077, NCTC10764_03847, NCTC10767_01500, NCTC10865_00642, NCTC10974_00533, NCTC11112_01052, NCTC11124_04730, NCTC11126_02754, NCTC11181_02722, NCTC11341_01905, NCTC12950_00463, NCTC13148_03456, NCTC4450_02459, NCTC7927_00535, NCTC7928_02533, NCTC8009_01493, NCTC8179_05925, NCTC8333_00473, NCTC8500_00318, NCTC8621_00492, NCTC8622_00522, NCTC8959_03277, NCTC8960_03054, NCTC8985_04965, NCTC9001_04236, NCTC9044_01376, NCTC9045_00549, NCTC9073_00398, NCTC9075_00708, NCTC9081_00901, NCTC9117_00740, NCTC9702_00521, NCTC9706_02721, NCTC9962_06781, NEP60_26375, O5851_12245, RG28_21695, SAMEA3752557_01968, TUM18780_04200
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQV2
#26: タンパク質 50S ribosomal protein L24


分子量: 11339.250 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rplX, A8502_004032, A9X72_02230, ACN81_25475, ACU57_21005, AM464_09175, AW118_24855, AWP47_12690, B6R15_004078, B6R31_004977, BANRA_04319, BCB93_004284, BER14_25145, BF481_004939, BG944_ ...遺伝子: rplX, A8502_004032, A9X72_02230, ACN81_25475, ACU57_21005, AM464_09175, AW118_24855, AWP47_12690, B6R15_004078, B6R31_004977, BANRA_04319, BCB93_004284, BER14_25145, BF481_004939, BG944_001124, BGM66_003602, BJI68_08720, BJJ90_02170, BK292_20460, BK383_24690, BKL28_004552, BTB68_004365, BTQ06_10645, BvCmsKKP061_03021, BvCmsSIP010_02676, BXT93_05520, C0P57_002659, C1Q91_004913, C2121_004171, C2M16_25450, C2R31_004624, C3F40_19765, C9E67_02770, C9Z68_22590, CA593_09695, CF22_004858, CG704_20915, CG831_003640, CIG67_10720, CQ986_004890, CR538_02465, CR539_21855, CR628_001357, CTR35_003621, CV83915_02789, CY655_21275, D4M65_20610, D9D43_22595, DD762_23585, DIV22_15220, DNQ45_03795, DNX30_25440, DQ87_004785, DS732_24300, DTL43_20960, DU321_12040, E4K51_21530, E5H86_24485, E6D34_21720, EAI46_07515, EC95NR1_02700, ECs4174, EEP55_004501, EIA08_23995, EIZ93_12430, EN85_004358, EPS97_20055, ExPECSC038_03649, F7F11_22685, F7N46_23970, F9407_19255, F9413_21195, F9461_25615, F9B07_24645, FEJ01_22475, FIJ20_21155, FJQ40_18345, FKO60_25675, FOI11_019220, FOI11_03960, FPS11_25390, FTV92_20675, FTV93_20860, FV293_22425, FVB16_04910, FWK02_06310, FZN31_02595, FZU14_21860, G3V95_19885, G4A38_21550, G4A47_20820, G5603_24625, G8C01_22515, G9448_17035, GAI89_24790, GAJ12_24680, GJ11_21425, GKF66_21585, GNW61_16670, GOP25_22745, GP954_00905, GP965_04335, GP975_01225, GP979_01965, GQA06_03910, GQM04_10605, GQM13_25240, GQM21_11270, GQW07_21510, GRO95_20775, GRW05_09100, GRW24_04715, GRW56_00335, GRW57_03500, GTP92_23155, GUC01_21220, H0O72_19455, HCQ42_003941, HEP30_018675, HEP34_004763, HHH44_004528, HI055_004147, HJQ60_005004, HLX92_10035, HLZ50_22140, HMV95_19645, HV109_02150, HV146_21710, HV209_14675, HVW04_17495, HVW43_18630, HVY77_02135, HVZ29_19135, HX086_19445, HX136_02155, I0E88_004510, I6H00_20885, I6H02_12030, IUC12_004853, J0541_004404, J5U05_004080, JNP96_25345, KV259_004351, KV317_004323, KV371_004337, KV406_004330, KV449_004365, KV455_004328, KV463_004350, KV469_004343, KV499_004414, KV500_004301, NCTC10082_02832, NCTC10418_00684, NCTC10764_03856, NCTC10865_00652, NCTC10974_00542, NCTC11124_04721, NCTC11181_02731, NCTC11341_01896, NCTC12950_00472, NCTC7922_04049, NCTC7927_00544, NCTC8009_01504, NCTC8179_05935, NCTC8333_00482, NCTC8500_00327, NCTC8621_00501, NCTC8622_00513, NCTC8960_03063, NCTC8985_04975, NCTC9044_01365, NCTC9045_00558, NCTC9077_00597, NCTC9117_00749, NCTC9702_00530, NCTC9706_02730, NEP60_26330, O5851_12290, RG28_21650, SAMEA3752557_01959, TUM18780_04290, WR15_19645
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQZ7
#29: タンパク質 50S ribosomal protein L28


分子量: 9027.551 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmB, ECVG_03476 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A1X3JA73
#31: タンパク質 50S ribosomal protein L30


分子量: 6554.820 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rpmD, A5U30_004536, A6592_25715, A8499_003316, A8502_004039, A9X72_02265, AC065_15925, ACN81_25440, ACU57_21040, AM464_09140, APX88_16155, AW118_24820, AWP47_12725, B6R12_002823, B6R15_ ...遺伝子: rpmD, A5U30_004536, A6592_25715, A8499_003316, A8502_004039, A9X72_02265, AC065_15925, ACN81_25440, ACU57_21040, AM464_09140, APX88_16155, AW118_24820, AWP47_12725, B6R12_002823, B6R15_004085, B6R17_004958, B6R31_004984, B6R48_005051, B6R87_004961, BANRA_04312, BB540_01660, BER14_25110, BF481_004946, BG944_001117, BGM66_003609, BHS81_19755, BJI68_08755, BJJ90_02205, BK292_20425, BK383_24725, BKL28_004559, BMT50_12295, BMT91_19990, BR158_003774, BTB68_004372, BTQ06_10610, BUO55_004713, BvCmsKKP061_03014, BvCmsSIP010_02669, BXT93_05555, BZL69_25950, C0P57_002652, C1Q91_004920, C2121_004178, C2M16_25485, C2R31_004617, C3F40_19800, C5N07_23570, C9E67_02805, C9Z68_22555, CA593_09730, CCS08_00135, CCU84_002918, CDL36_25590, CF22_004865, CG692_20265, CG704_20950, CG831_003633, CIG67_10755, CQ986_004897, CQB02_00630, CR538_02500, CR539_21820, CR628_001350, CRM83_22925, CTR35_003614, CV83915_02796, CWS33_24860, CX938_003815, CY655_21240, D1912_11425, D3G36_23130, D4M65_20575, D4N09_20175, D6T60_05695, D9D43_22630, D9E34_23605, D9E49_05160, D9H94_20830, D9J03_20055, D9J61_16655, DD762_23550, DIV22_15255, DNQ45_03760, DNX30_25475, DS732_24265, DTL43_20995, DTL90_24695, DTM45_24550, DU321_12005, E0I52_20145, E4K51_21495, E5H86_24520, E6D34_21755, EA239_22795, EAI46_07480, EB534_RS01705, EC95NR1_02693, ECs4167, EIA08_23960, EIZ93_12465, EN85_004365, EPS76_07210, EPS97_20090, ERS085406_04406, ERS139208_04354, EWK56_25000, ExPECSC038_03656, F3P10_05565, F7F11_22720, F7N46_24005, F9413_21230, F9461_25650, F9B07_24680, FA868_22750, FEJ01_22510, FFF58_25450, FGG80_25130, FHD44_21270, FHQ97_20115, FIJ20_21190, FJQ40_18310, FKO60_25640, FN993_004711, FOI11_019255, FOI11_03925, FPI65_20310, FPS11_25425, FTV92_20710, FTV93_20895, FV293_22460, FVB16_04875, FWK02_06275, FZN31_02630, FZU14_21825, G3V95_19850, G3W53_20960, G4A38_21515, G4A47_20785, G5603_24590, G9448_17070, GAI89_24825, GAJ12_24715, GAJ26_22015, GGB84_004467, GIB53_19395, GJ11_21390, GKF52_21245, GKF66_21550, GKF89_18475, GNW61_16635, GOP14_004273, GOP25_22710, GP711_23310, GP954_00940, GP965_04300, GP975_01190, GP979_02000, GQA06_03945, GQM04_10570, GQM13_25205, GQM17_19920, GQM21_11235, GQN34_23270, GQW07_21545, GRO95_20810, GRW05_09065, GRW24_04750, GRW56_00300, GRW57_03535, GSM54_23325, GSY44_20005, GUC01_21185, GUI33_20050, H0O53_20825, H0O72_19420, H0P11_20920, H5Z35_004789, H6Y26_003164, HCQ42_003948, HEP30_018640, HEP34_004770, HHH44_004535, HI055_004140, HIE29_005187, HJY54_004753, HKA49_005035, HLQ92_22595, HLV18_23335, HLX92_10070, HLZ50_22175, HMV95_19610, HMW38_23110, HV109_02185, HV146_21675, HV209_14710, HVV39_09270, HVW04_17530, HVW43_18665, HVY77_02170, HVZ29_19100, HVZ30_02050, HVZ71_02355, HX136_02190, I6H00_20920, I6H02_11995, IFB95_004806, IUD45_003540, J0541_004397, J4S20_004802, J5U05_004087, J7T50_001453, JFD_01884, JFD_03713, JNP96_25310, KQ660_11775, NCTC10082_02839, NCTC10089_00502, NCTC10090_03527, NCTC10418_00690, NCTC10429_01095, NCTC10487_00445, NCTC10764_03863, NCTC10767_01516, NCTC10865_00661, NCTC10974_00551, NCTC11126_02771, NCTC11127_03223, NCTC11181_02738, NCTC11341_01889, NCTC12950_00479, NCTC13127_00786, NCTC4450_02475, NCTC7922_04042, NCTC7927_00551, NCTC7928_02516, NCTC8009_01511, NCTC8179_05942, NCTC8333_00489, NCTC8450_04937, NCTC8500_00335, NCTC8621_00508, NCTC8622_00507, NCTC8959_03261, NCTC8960_03070, NCTC8985_04982, NCTC9001_04254, NCTC9044_01356, NCTC9045_00566, NCTC9050_03611, NCTC9071_00483, NCTC9073_00380, NCTC9075_00724, NCTC9077_00604, NCTC9081_00918, NCTC9111_00867, NCTC9117_00756, NCTC9702_00537, NCTC9706_02737, NCTC9775_04003, NCTC9777_01891, NEP60_26295, OS110_25120, RG28_21615, SAMEA3472044_01162, SAMEA3472056_05411, SAMEA3752557_01952, SAMEA3753106_04634, TUM18780_04360, WR15_19610
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SR32
#32: タンパク質 50S ribosomal protein L31 / Large ribosomal subunit protein bL31-A


分子量: 7887.117 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmE, b3936, JW3907 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7M9
#33: タンパク質 50S ribosomal protein L32


分子量: 6463.445 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rpmF, rpmF_1, A5U30_002830, A8502_000661, A9X72_15435, ACN81_09130, ACU57_04225, AM464_23480, AW118_12110, AWP47_13180, B6R15_001792, B6R31_003138, BANRA_01624, BCB93_002043, BER14_10210, ...遺伝子: rpmF, rpmF_1, A5U30_002830, A8502_000661, A9X72_15435, ACN81_09130, ACU57_04225, AM464_23480, AW118_12110, AWP47_13180, B6R15_001792, B6R31_003138, BANRA_01624, BCB93_002043, BER14_10210, BF481_002131, BG944_003607, BGM66_002729, BJI68_20640, BJJ90_15780, BK292_02505, BK383_03640, BKL28_002219, BTB68_003153, BTQ06_08080, BvCmsKKP061_02173, BvCmsSIP010_04163, BXT93_21825, C0P57_001747, C1Q91_003167, C2121_002257, C2M16_23600, C2R31_002348, C3F40_06530, C9E67_18185, C9Z68_07340, CA593_23040, CF22_003088, CG692_05970, CG704_04105, CG831_001542, CIG67_21935, CQ986_001084, CR538_15635, CR539_10135, CR628_002785, CTR35_002374, CV83915_00494, CY655_06595, D1912_08350, D3C88_19355, D3G36_11860, D4M65_04795, D4N09_11015, D9D43_11825, D9E49_23135, D9J61_04035, DD762_03625, DIV22_29035, DNQ45_10015, DNX30_12140, DQ87_002042, DS732_10505, DTL43_16270, DU321_22840, E4K51_18340, E5H86_12535, E6D34_10935, EAI46_03975, EC95NR1_05485, ECs1467, EEP55_000822, EIA08_02925, EIZ93_13150, EN85_002840, EPS76_00770, EPS97_06370, EWK56_20060, ExPECSC038_03490, F7F11_10320, F7N46_02450, F9413_18150, F9461_13585, F9B07_16900, FEJ01_12565, FIJ20_07300, FJQ40_00940, FKO60_17370, FOI11_007500, FOI11_14470, FPI65_06540, FPS11_20235, FTV92_08325, FTV93_08485, FV293_19565, FVB16_04695, FWK02_15570, FZN31_14620, FZU14_20010, G3V95_08050, G3W53_15755, G4A38_16050, G4A47_15410, G5603_00600, G8C01_10030, G9448_05130, GAI89_13280, GAJ12_13930, GGB84_000483, GJ11_06555, GKF66_05180, GNW61_10640, GOP25_17405, GP711_16475, GP954_12815, GP965_04045, GP975_03585, GP979_13150, GQA06_08430, GQM04_02110, GQM13_14340, GQM21_06935, GQN34_10245, GQW07_08880, GRO95_10420, GRW05_02410, GRW24_27585, GRW56_06550, GRW57_07595, GTP92_19120, GUC01_01680, H0O72_16850, HCQ42_001914, HEP30_011955, HEP34_001075, HHH44_003019, HI055_001485, HIE29_000052, HJQ60_005092, HLX92_03690, HLZ50_01830, HMV95_16370, HV109_14610, HV146_09250, HV209_29060, HVV39_00410, HVW04_05590, HVW43_06430, HVY77_15765, HVZ29_08715, HX086_07035, HX136_15650, I0E88_003516, I6H00_08540, I6H02_24530, IFB95_003696, IUC12_000121, J0541_003169, J5U05_002959, JNP96_10710, KV259_001392, KV317_003230, KV371_000953, KV406_001102, KV449_001342, KV455_003227, KV463_001049, KV469_000542, KV499_000679, KV500_001199, NCTC10082_00641, NCTC10089_03005, NCTC10090_00680, NCTC10418_04509, NCTC10764_02647, NCTC10767_05044, NCTC10865_03684, NCTC10974_03416, NCTC11126_00919, NCTC11181_00164, NCTC11341_04894, NCTC12950_03296, NCTC13148_05706, NCTC4450_04127, NCTC7922_00634, NCTC7927_03385, NCTC7928_00455, NCTC8009_05657, NCTC8179_02874, NCTC8333_03590, NCTC8621_03238, NCTC8622_05813, NCTC8959_00826, NCTC8960_00763, NCTC8985_01747, NCTC9044_04397, NCTC9045_03550, NCTC9073_01975, NCTC9075_04022, NCTC9077_03763, NCTC9081_03511, NCTC9117_03837, NCTC9706_00412, NCTC9962_06984, NEP60_22810, O5851_21660, RG28_16890, SAMEA3752557_01555, TUM18780_25170, WR15_23855
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3TE02
#34: タンパク質 50S ribosomal protein L33


分子量: 6388.631 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rpmG, rpmG_1, A5U30_004136, A6592_21955, A8499_000792, A8502_002345, A9X72_00400, AC065_17670, ACN81_07125, ACU57_07205, AM464_10960, APX88_07835, AW118_10740, AWP47_15985, B6R12_001909, ...遺伝子: rpmG, rpmG_1, A5U30_004136, A6592_21955, A8499_000792, A8502_002345, A9X72_00400, AC065_17670, ACN81_07125, ACU57_07205, AM464_10960, APX88_07835, AW118_10740, AWP47_15985, B6R12_001909, B6R15_003224, B6R17_003336, B6R31_002865, B6R48_003283, B6R87_003156, BANRA_04677, BB540_10150, BER14_16165, BF481_000671, BG944_002239, BGM66_003973, BHS81_21690, BJI68_21710, BJJ90_00390, BK292_09690, BK383_09650, BKL28_001549, BMT50_10565, BMT91_13845, BR158_003843, BTB68_002398, BTQ06_17850, BUO55_001749, BvCmsKKP061_03496, BvCmsSIP010_04504, BXT93_06220, BZL69_22230, C0P57_003843, C1Q91_001907, C2121_003322, C2M16_17175, C2R31_004081, C3F40_17705, C5N07_22255, C9E67_00890, C9Z68_15420, CA593_07900, CCS08_06865, CCU84_004237, CDL36_16035, CF22_002026, CG692_01875, CG704_10010, CG831_000991, CIG67_03795, CQ986_000108, CQB02_22645, CR538_00630, CR539_23800, CR628_001528, CRM83_20955, CTR35_001077, CV83915_02464, CWS33_14490, CX938_000998, CY655_23100, D3C88_33140, D3G36_09395, D4M65_14910, D4N09_11500, D6T60_21010, D9D43_20690, D9E34_16170, D9E49_10195, D9H94_14645, D9J03_19890, D9J61_14005, DD762_15060, DIV22_25130, DNQ45_17840, DNX30_21910, DS732_26145, DTL43_17805, DTL90_19180, DTM45_13255, DU321_24275, E0I52_14235, E4K51_19990, E5H86_15640, E6D34_14175, EA239_11595, EB534_RS18180, EC95NR1_03037, ECs4511, EIA08_13065, EIMP300_11190, EIZ93_22910, EN85_002943, EPS76_16410, EPS97_14120, ERS085406_02634, ERS139208_03027, EWK56_19235, ExPECSC038_00886, F3P10_10725, F7F11_22995, F7N46_06895, F9413_20155, F9461_04500, F9B07_09850, FA868_19515, FEJ01_05435, FFF58_21805, FGG80_07720, FHD44_20765, FHQ97_14415, FIJ20_14735, FJQ40_22750, FKO60_20795, FN993_001905, FOI11_017545, FOI11_05635, FPI65_22380, FPS11_15665, FTV92_18865, FTV93_19030, FV293_17885, FVB16_08575, FWK02_20790, FZN31_00850, FZU14_11310, G3V95_06555, G3W53_09755, G4A38_07645, G4A47_07035, G5603_14155, G9448_15395, GAI89_21025, GAJ12_25750, GAJ26_19905, GGB84_002816, GIB53_07680, GJ11_23260, GKF52_07040, GKF66_06090, GKF89_01305, GNW61_15010, GOP14_002925, GOP25_22240, GP711_14020, GP965_18420, GP975_06785, GQM04_18880, GQM13_19245, GQM17_16535, GQM21_20675, GQN34_13365, GQW07_04785, GRO95_05820, GRW05_17070, GRW24_04500, GRW56_13140, GRW57_14295, GSM54_05345, GSY44_19835, GUC01_19125, GUI33_04785, H0O53_07375, H0O72_08715, H0P11_12255, H5Z35_003529, H6Y26_001161, HCQ42_003479, HEP30_004320, HEP34_000581, HHH44_001955, HI055_001939, HIE29_002315, HJQ60_004388, HJY54_003834, HKA49_003561, HLQ92_16260, HLV18_18020, HLX92_21165, HLZ50_07765, HMV95_17960, HMW38_12345, HV109_00345, HV146_00330, HV209_24710, HVV39_10960, HVW04_15855, HVW43_16870, HVY77_00425, HVZ29_00305, HVZ30_00460, HVZ71_00385, HX136_00340, I6H00_19205, I6H02_13660, IFB95_001325, IUD45_003655, J0541_001519, J4S20_003173, J5U05_003670, J7T50_004317, JFD_02865, JFD_02951, JNP96_26980, KQ660_13480, NCTC10082_02483, NCTC10089_00164, NCTC10090_03179, NCTC10418_00180, NCTC10429_00616, NCTC10487_00103, NCTC10764_03481, NCTC10767_01151, NCTC10865_00201, NCTC10974_00127, NCTC11112_01599, NCTC11126_01709, NCTC11127_03609, NCTC11181_02394, NCTC11341_02337, NCTC12950_00092, NCTC13127_00380, NCTC4450_02132, NCTC7922_04520, NCTC7927_00189, NCTC7928_02970, NCTC8009_00971, NCTC8179_05536, NCTC8333_00121, NCTC8450_04550, NCTC8500_05792, NCTC8621_00171, NCTC8959_03599, NCTC8960_02723, NCTC8985_04527, NCTC9001_03782, NCTC9044_01835, NCTC9045_00169, NCTC9050_03266, NCTC9071_00140, NCTC9073_06389, NCTC9075_00237, NCTC9077_00137, NCTC9081_00502, NCTC9111_00516, NCTC9117_00296, NCTC9702_00106, NCTC9706_02375, NCTC9775_03637, NCTC9777_01519, NCTC9962_01072, NEP60_12970, OS110_19615, RG28_23350, SAMEA3472044_00655, SAMEA3472056_04704, SAMEA3752557_01144, SAMEA3753106_03495, TUM18780_00760, WR15_15810
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SME7
#35: タンパク質・ペプチド 50S ribosomal protein L34


分子量: 5397.463 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmH / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: B7MGC4
#36: タンパク質 50S ribosomal protein L35 / Large ribosomal subunit protein bL35 / Ribosomal protein A


分子量: 7313.032 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmI, b1717, JW1707 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7Q1
#37: タンパク質・ペプチド 50S ribosomal protein L36


分子量: 4377.390 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmJ / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A0E2L017

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Large ribosomal subunit protein ... , 15種, 15分子 DEFGJKLNOPRSVWY

#9: タンパク質 Large ribosomal subunit protein uL4 / 50S ribosomal protein L4


分子量: 22121.566 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplD, eryA, b3319, JW3281 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P60723
#10: タンパク質 Large ribosomal subunit protein uL5 / 50S ribosomal protein L5


分子量: 20333.611 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplE, b3308, JW3270 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P62399
#11: タンパク質 Large ribosomal subunit protein uL6 / 50S ribosomal protein L6


分子量: 18932.791 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplF, b3305, JW3267 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0AG55
#12: タンパク質 Large ribosomal subunit protein bL9 / 50S ribosomal protein L9


分子量: 15789.020 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplI, b4203, JW4161 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7R1
#15: タンパク質 Large ribosomal subunit protein uL13 / 50S ribosomal protein L13


分子量: 16050.606 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplM, b3231, JW3200 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0AA10
#16: タンパク質 Large ribosomal subunit protein uL14 / 50S ribosomal protein L14


分子量: 13565.067 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplN, b3310, JW3272 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0ADY3
#17: タンパク質 Large ribosomal subunit protein uL15 / 50S ribosomal protein L15


分子量: 15008.471 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplO, b3301, JW3263 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P02413
#19: タンパク質 Large ribosomal subunit protein bL17 / 50S ribosomal protein L17


分子量: 14393.657 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplQ, b3294, JW3256 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0AG44
#20: タンパク質 Large ribosomal subunit protein uL18 / 50S ribosomal protein L18


分子量: 12794.668 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplR, b3304, JW3266 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0C018
#21: タンパク質 Large ribosomal subunit protein bL19


分子量: 13159.278 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplS / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7K8
#23: タンパク質 Large ribosomal subunit protein bL21 / 50S ribosomal protein L21


分子量: 11586.374 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplU, UTI89_C3620 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: Q1R6F0
#24: タンパク質 Large ribosomal subunit protein uL22 / 50S ribosomal protein L22


分子量: 12253.359 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplV, UTI89_C3767 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: Q1R610
#27: タンパク質 Large ribosomal subunit protein bL25


分子量: 10713.465 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplY / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P68919
#28: タンパク質 Large ribosomal subunit protein bL27


分子量: 9146.540 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmA / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7M0
#30: タンパク質 Large ribosomal subunit protein uL29


分子量: 7286.464 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rpmC, A5U30_004546, A8502_004029, ACN81_25490, ACU57_20990, AW118_24870, AWP47_12675, B6R15_004075, B6R31_004974, BANRA_01943, BANRA_04322, BE932_15505, BER14_25160, BG944_001127, BGM66_ ...遺伝子: rpmC, A5U30_004546, A8502_004029, ACN81_25490, ACU57_20990, AW118_24870, AWP47_12675, B6R15_004075, B6R31_004974, BANRA_01943, BANRA_04322, BE932_15505, BER14_25160, BG944_001127, BGM66_003599, BGZ_02596, BGZ_04119, BJI68_08705, BK292_20475, BK383_24675, BKL28_004549, BTB68_004362, BTQ06_10660, BvCmsKKP061_03024, BvCmsSIP010_02679, BXT93_05505, C0P57_002662, C1Q91_004910, C2121_004168, C2M16_25435, C2R31_004627, C3F40_19750, C9Z68_22605, CF22_004855, CG704_20900, CG831_003643, CIG67_10705, CTR35_003624, CV83915_02786, D3G36_23080, D4M65_20625, D4N09_20225, D9D43_22580, D9E49_05210, D9J61_16705, DD762_23600, DIV22_15205, DNQ45_03810, DNX30_25425, DS732_24315, DTL43_20945, DU321_12055, E4K51_21545, E5H86_24470, E6D34_21705, EAI46_07530, ECs4177, EIA08_24010, EIMP300_17750, EIZ93_12415, EN85_004355, EPS76_07160, EPS97_20040, EWK56_25050, ExPECSC038_03646, F7F11_22670, F7N46_23955, F9413_21180, F9461_25600, F9B07_24630, FGAF848_25910, FIJ20_21140, FJQ40_18360, FKO60_25690, FOI11_019205, FOI11_03975, FORC44_0486, FPI65_20360, FPS11_25375, FTV93_20845, FVB16_04925, FWK02_06325, FZU14_21875, G3V95_19900, G3W53_21010, G4A38_21565, G4A47_20835, G5603_24640, GAI89_24775, GAJ12_24665, GKF66_21600, GNW61_16685, GOP25_22760, GP711_23360, GP954_00890, GP965_04350, GP975_01240, GP979_01950, GQA06_03895, GQE86_20135, GQM04_10620, GQM13_25255, GQM21_11285, GQN34_23320, GQW07_21495, GRC73_21695, GRO95_20760, GRW05_09115, GRW24_04700, GRW56_00350, GRW57_03485, GUC01_21235, H0O72_19470, HEP30_018690, HEP34_004760, HHH44_004525, HI055_004150, HIE29_005197, HJQ60_005001, HLX92_10020, HLZ50_22125, HMV95_19660, HV109_02135, HV209_14660, HVV39_09320, HVW04_17480, HVW43_18615, HVY77_02120, I6H00_20870, I6H02_12045, IFB95_004816, J0541_004407, J5U05_004077, JNP96_25360, KV499_004411, NCTC10082_02829, NCTC10089_00492, NCTC10418_00681, NCTC10429_01084, NCTC10764_03853, NCTC10767_01506, NCTC10865_00649, NCTC10974_00539, NCTC11126_02760, NCTC11181_02728, NCTC11341_01899, NCTC7922_04052, NCTC7927_00541, NCTC7928_02527, NCTC8009_01501, NCTC8179_05932, NCTC8333_00479, NCTC8500_00324, NCTC8621_00498, NCTC8622_00516, NCTC8959_03271, NCTC8960_03060, NCTC8985_04972, NCTC9001_04244, NCTC9044_01368, NCTC9045_00555, NCTC9075_00714, NCTC9077_00594, NCTC9081_00907, NCTC9117_00746, NCTC9702_00527, NCTC9706_02727, NCTC9962_06787, NEP60_26345, OGM49_22385, QDW62_02140, RZR61_12945, SAMEA3472112_00683, SAMEA3752557_01962, WR15_19660
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQY2

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30S ribosomal protein ... , 11種, 11分子 ghiklpruwyz

#38: タンパク質 30S ribosomal protein S2


分子量: 26781.670 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsB / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3TPN2
#39: タンパク質 30S ribosomal protein S3


分子量: 26031.316 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsC / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: B7MCS9
#40: タンパク質 30S ribosomal protein S4


分子量: 23514.199 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsD, ramA, b3296, JW3258 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7V8
#42: タンパク質 30S ribosomal protein S6 / Small ribosomal subunit protein bS6


分子量: 15727.512 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsF, b4200, JW4158 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P02358
#43: タンパク質 30S ribosomal protein S7 / Small ribosomal subunit protein uS7


分子量: 20055.156 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsG, b3341, JW3303 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P02359
#47: タンパク質 30S ribosomal protein S11


分子量: 13870.975 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsK / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: B7MCR3
#49: タンパク質 30S ribosomal protein S13


分子量: 13128.467 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsM, G711_03878 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A7U9IV78
#52: タンパク質 30S ribosomal protein S16


分子量: 9207.572 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsP / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SYP2
#54: タンパク質 30S ribosomal protein S18


分子量: 9005.472 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsR / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A0E2KXL3
#56: タンパク質 30S ribosomal protein S20


分子量: 9708.464 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsT / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3TRH7
#57: タンパク質 30S ribosomal protein S21


分子量: 8524.039 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsU / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A0E2L2J1

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Small ribosomal subunit protein ... , 9種, 9分子 jmnoqstvx

#41: タンパク質 Small ribosomal subunit protein uS5 / 30S ribosomal protein S5


分子量: 17629.398 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli 0.1197 (大腸菌) / 遺伝子: rpsE, spc, b3303, JW3265 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7W1
#44: タンパク質 Small ribosomal subunit protein uS8


分子量: 14146.557 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsH / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SR12
#45: タンパク質 Small ribosomal subunit protein uS9


分子量: 14886.270 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsI / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SRY2
#46: タンパク質 Small ribosomal subunit protein uS10


分子量: 11755.597 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsJ / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQT7
#48: タンパク質 Small ribosomal subunit protein uS12


分子量: 13814.249 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rpsL, rpsL_2, A5U30_003889, A6592_18175, A8499_001308, A8502_001035, A9X72_02055, AC065_16140, ACN81_28395, ACU57_16335, AM464_09350, APX88_20135, AW118_19390, AWP47_12580, B6R12_000406, ...遺伝子: rpsL, rpsL_2, A5U30_003889, A6592_18175, A8499_001308, A8502_001035, A9X72_02055, AC065_16140, ACN81_28395, ACU57_16335, AM464_09350, APX88_20135, AW118_19390, AWP47_12580, B6R12_000406, B6R15_000411, B6R17_004092, B6R31_002238, B6R48_002865, B6R87_002647, BANRA_04338, BB540_24940, BER14_21580, BF481_000994, BG944_001143, BGM66_002197, BHS81_20025, BJI68_15120, BJJ90_01995, BK292_07945, BK383_21385, BKL28_001878, BMT50_12160, BMT91_03340, BR158_000836, BTB68_000004, BTQ06_10750, BUO55_003823, BvCmsKKP061_02719, BvCmsSIP010_02074, BXT93_17220, BZL69_05785, C0P57_000744, C1Q91_001774, C2121_001894, C2M16_10980, C2R31_002848, C3F40_19595, C5N07_11865, C9E67_02665, C9Z68_19360, CA593_09530, CCS08_20045, CCU84_000778, CDL36_09745, CF22_001801, CG692_18330, CG704_07645, CG831_001292, CIG67_21255, CQ986_000431, CQB02_21500, CR538_02285, CR539_21960, CR628_001376, CRM83_22785, CTR35_001824, CV83915_02769, CWS33_10820, CX938_000715, CY655_21380, D1912_26245, D3C88_25690, D3G36_06655, D4M65_08955, D4N09_12780, D6T60_05835, D9D43_04015, D9E34_05370, D9E49_05360, D9H94_02360, D9J03_02800, D9J61_04455, DD762_11810, DIV22_04600, DNQ45_18710, DNX30_18200, DS732_24475, DTL43_13765, DTL90_06910, DTM45_15580, DU321_12135, E0I52_09925, E4K51_10545, E5H86_09220, E6D34_04010, EA239_12250, EAI46_06760, EB534_RS01835, EC95NR1_02719, ECs4193, EIA08_12060, EIZ93_01385, EN85_000596, EPS76_12695, EPS97_04830, ERS085406_01915, ERS139208_04106, EWK56_16220, ExPECSC038_01207, F3P10_03820, F7F11_11880, F7N46_14475, F9413_23615, F9461_02860, F9B07_12795, FA868_17430, FEJ01_10185, FFF58_13835, FGG80_13730, FHD44_12480, FHQ97_05960, FIJ20_20680, FJQ40_03220, FKO60_13770, FN993_002408, FOI11_019055, FOI11_04125, FPI65_20520, FPS11_03565, FTV92_20575, FTV93_20685, FV293_08660, FVB16_09155, FWK02_07820, FZN31_02500, FZU14_04005, G3V95_05795, G3W53_10630, G4A38_16715, G4A47_18305, G5603_11210, G9448_16940, GAI89_06495, GAJ12_06765, GAJ26_22145, GGB84_001627, GIB53_18845, GJ11_21590, GKF52_05665, GKF66_04705, GKF89_12265, GNW61_19825, GOP14_000555, GOP25_12270, GP711_17590, GP965_17670, GQM04_08870, GQM13_20845, GQM17_11035, GQM21_13045, GQN34_11870, GQW07_20360, GRO95_19555, GRW05_23630, GRW24_12145, GRW56_12155, GRW57_13500, GSM54_01330, GSY44_04760, GUC01_14585, GUI33_18070, H0O53_20260, H0O72_13185, H0P11_14900, H5Z35_001968, H6Y26_003204, HCQ42_003768, HEP30_005280, HEP34_002415, HHH44_000548, HI055_002196, HIE29_002006, HJQ60_002804, HJY54_002830, HKA49_001073, HLQ92_04845, HLV18_11670, HLX92_09940, HLZ50_06780, HMV95_07635, HMW38_08385, HV109_01985, HV146_21805, HV209_14580, HVV39_09470, HVW04_17400, HVW43_18535, HVY77_01970, HVZ29_19230, HVZ30_01920, HVZ71_02225, HX136_01990, I6H00_20790, I6H02_12125, IFB95_001027, IUD45_003566, J0541_002092, J4S20_001155, J5U05_000731, J7T50_001493, JFD_01925, JFD_03753, JNP96_25510, KQ660_11905, NCTC10082_02799, NCTC10089_00476, NCTC10090_03501, NCTC10487_00418, NCTC10764_03836, NCTC10767_01481, NCTC10974_00472, NCTC11112_01085, NCTC11126_02723, NCTC11127_03263, NCTC11181_02712, NCTC11341_01920, NCTC12950_00439, NCTC13127_00758, NCTC13148_03489, NCTC4450_02449, NCTC7922_04088, NCTC7927_00509, NCTC8009_01480, NCTC8179_05915, NCTC8333_00463, NCTC8450_04911, NCTC8621_00480, NCTC8959_03287, NCTC8960_03044, NCTC8985_04955, NCTC9001_04208, NCTC9044_01386, NCTC9045_00521, NCTC9050_03585, NCTC9071_00443, NCTC9081_00877, NCTC9111_00841, NCTC9702_00511, NCTC9706_02614, NCTC9775_03976, NCTC9777_01848, NCTC9962_06745, NEP60_15855, OS110_10240, RG28_21750, SAMEA3472044_01122, SAMEA3472056_01947, SAMEA3752557_01992, SAMEA3753106_01938, TUM18780_04100, WR15_02645
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQR7
#50: タンパク質 Small ribosomal subunit protein uS14


分子量: 11606.560 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsN, NCTC9073_00385 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A2X1PQW4
#51: タンパク質 Small ribosomal subunit protein uS15


分子量: 10290.816 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsO / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SSQ7
#53: タンパク質 Small ribosomal subunit protein uS17


分子量: 9724.491 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsQ / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQY7
#55: タンパク質 Small ribosomal subunit protein uS19


分子量: 10455.355 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsS / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQW2

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非ポリマー , 3種, 443分子

#58: 化合物...
ChemComp-MG / MAGNESIUM ION / マグネシウムジカチオン


分子量: 24.305 Da / 分子数: 439 / 由来タイプ: 合成 / 式: Mg
#59: 化合物 ChemComp-ZN / ZINC ION


分子量: 65.409 Da / 分子数: 2 / 由来タイプ: 合成 / 式: Zn
#60: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 2 / 由来タイプ: 天然 / 式: H2O

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詳細

研究の焦点であるリガンドがあるかN
Has protein modificationY

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実験情報

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実験

実験手法: 電子顕微鏡法
EM実験試料の集合状態: PARTICLE / ３次元再構成法: 単粒子再構成法

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試料調製

構成要素
ID名称タイプEntity IDParent-ID由来
1Damaged 70S with PrfHRIBOSOME#1-#570MULTIPLE SOURCES
250SCOMPLEX#1, #3, #7-#371NATURAL
330SCOMPLEX1NATURAL
4tRNAORGANELLE OR CELLULAR COMPONENT#41RECOMBINANT
5Putative peptide chain release factor homologORGANELLE OR CELLULAR COMPONENT#61RECOMBINANT
由来(天然)生物種: Escherichia coli (大腸菌)
由来(組換発現)生物種: Escherichia coli (大腸菌)
緩衝液pH: 7.4
試料包埋: NO / シャドウイング: NO / 染色: NO / 凍結: YES
試料支持グリッドのタイプ: Quantifoil R1.2/1.3
急速凍結装置: FEI VITROBOT MARK IV / 凍結剤: ETHANE / 湿度: 100 % / 凍結前の試料温度: 277 K

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電子顕微鏡撮影

実験機器
モデル: Titan Krios / 画像提供: FEI Company
顕微鏡モデル: TFS KRIOS
電子銃電子線源: FIELD EMISSION GUN / 加速電圧: 300 kV / 照射モード: FLOOD BEAM
電子レンズモード: BRIGHT FIELD / 最大 デフォーカス（公称値）: 2500 nm / 最小 デフォーカス（公称値）: 1000 nm
撮影電子線照射量: 30 e/Å2 / 検出モード: SUPER-RESOLUTION
フィルム・検出器のモデル: FEI FALCON III (4k x 4k)

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解析

EMソフトウェア
ID名称カテゴリ
4CTFFINDCTF補正
10cryoSPARC初期オイラー角割当
11cryoSPARC最終オイラー角割当
12cryoSPARC分類
CTF補正タイプ: PHASE FLIPPING AND AMPLITUDE CORRECTION
3次元再構成解像度: 2.78 Å / 解像度の算出法: FSC 0.143 CUT-OFF / 粒子像の数: 104212 / 対称性のタイプ: POINT

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る