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Open data
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Basic information
Entry | Database: PDB / ID: 9i1m | ||||||
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Title | Structure of AauA, a sugar-binding protein with its substrate | ||||||
![]() | Sugar-binding protein | ||||||
![]() | SUGAR BINDING PROTEIN / sugar / transporter / E.coli / substrate-binding protein | ||||||
Function / homology | : / Periplasmic binding protein / Periplasmic binding protein domain / Periplasmic binding protein-like I / transmembrane transport / outer membrane-bounded periplasmic space / carbohydrate binding / : / Sugar-binding protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Josts, I. / Cottam, C. / Connolly, J.P.R. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structure of AauA, a sugar-binding protein with its substrate Authors: Josts, I. / Cottam, C. / Connolly, J.P.R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 134.9 KB | Display | ![]() |
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PDB format | ![]() | Display | ![]() | |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 456.4 KB | Display | ![]() |
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Full document | ![]() | 459.1 KB | Display | |
Data in XML | ![]() | 17.1 KB | Display | |
Data in CIF | ![]() | 24.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 35697.199 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() | ||||||||
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#2: Chemical | #3: Sugar | ChemComp-A1IZL / ( | Type: saccharide / Mass: 150.130 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C5H10O5 #4: Water | ChemComp-HOH / | Has ligand of interest | Y | Has protein modification | N | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.07 Å3/Da / Density % sol: 40.44 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / Details: 10% PEG 8000 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER2 XE 16M / Detector: PIXEL / Date: Sep 9, 2024 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9686 Å / Relative weight: 1 |
Reflection | Resolution: 1.35→38.9 Å / Num. obs: 50386 / % possible obs: 79.1 % / Redundancy: 6.2 % / CC1/2: 1 / Rmerge(I) obs: 0.028 / Net I/σ(I): 29.8 |
Reflection shell | Resolution: 1.35→1.37 Å / Redundancy: 3.2 % / Mean I/σ(I) obs: 7.5 / Num. unique obs: 574 / CC1/2: 0.98 / % possible all: 18.2 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 13.456 Å2
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Refinement step | Cycle: 1 / Resolution: 1.35→38.9 Å
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