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- PDB-9hax: F420-dependent glucose-6-phosphate dehydrogenase -

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ID or keywords:

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Basic information

Entry
Database: PDB / ID: 9hax
TitleF420-dependent glucose-6-phosphate dehydrogenase
ComponentsLuciferase family protein
KeywordsOXIDOREDUCTASE / glucose-6-phosphate dehydrogenase / F420
Function / homologyF420-dependent glucose-6-phosphate dehydrogenase-related / : / Luciferase-like domain / Luciferase-like monooxygenase / Luciferase-like domain superfamily / oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen / Luciferase family protein
Function and homology information
Biological speciesThermomicrobium roseum DSM 5159 (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.513 Å
AuthorsPalm, G.J. / Berndt, L. / Lammers, M.
Funding support1items
OrganizationGrant numberCountry
Not funded
CitationJournal: To Be Published
Title: Discovery of a coenzyme F420-dependent glucose-6-phosphate dehydrogenase from Thermomicrobium roseum
Authors: Last, D. / Hasan, M. / Hemmann, J.T. / Kroeber, T.D.U. / Palm, G.J. / Lammers, M. / Lackner, G.
History
DepositionNov 5, 2024Deposition site: PDBE / Processing site: PDBE
Revision 1.0Nov 19, 2025Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Luciferase family protein
B: Luciferase family protein
C: Luciferase family protein
D: Luciferase family protein
E: Luciferase family protein
F: Luciferase family protein
G: Luciferase family protein
H: Luciferase family protein
I: Luciferase family protein
J: Luciferase family protein
K: Luciferase family protein
L: Luciferase family protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)511,69666
Polymers507,66012
Non-polymers4,03654
Water5,765320
1
A: Luciferase family protein
B: Luciferase family protein
C: Luciferase family protein
D: Luciferase family protein
E: Luciferase family protein
F: Luciferase family protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)255,91434
Polymers253,8306
Non-polymers2,08428
Water1086
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area25220 Å2
ΔGint-432 kcal/mol
Surface area68730 Å2
MethodPISA
2
G: Luciferase family protein
H: Luciferase family protein
I: Luciferase family protein
J: Luciferase family protein
K: Luciferase family protein
L: Luciferase family protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)255,78232
Polymers253,8306
Non-polymers1,95226
Water1086
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area24960 Å2
ΔGint-410 kcal/mol
Surface area68660 Å2
MethodPISA
Unit cell
Length a, b, c (Å)104.528, 239.408, 108.2
Angle α, β, γ (deg.)90, 108.588, 90
Int Tables number4
Space group name H-MP1211
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11A
21A
32A
42A
53A
63A
74A
84A
95A
105A
116A
126A
137A
147A
158A
168A
179A
189A
1910A
2010A
2111A
2211A
2312A
2412A
2513A
2613A
2714A
2814A
2915A
3015A
3116A
3216A
3317A
3417A
3518A
3618A
3719A
3819A
3920A
4020A
4121A
4221A
4322A
4422A
4523A
4623A
4724A
4824A
4925A
5025A
5126A
5226A
5327A
5427A
5528A
5628A
5729A
5829A
5930A
6030A
6131A
6231A
6332A
6432A
6533A
6633A
6734A
6834A
6935A
7035A
7136A
7236A
7337A
7437A
7538A
7638A
7739A
7839A
7940A
8040A
8141A
8241A
8342A
8442A
8543A
8643A
8744A
8844A
8945A
9045A
9146A
9246A
9347A
9447A
9548A
9648A
9749A
9849A
9950A
10050A
10151A
10251A
10352A
10452A
10553A
10653A
10754A
10854A
10955A
11055A
11156A
11256A
11357A
11457A
11558A
11658A
11759A
11859A
11960A
12060A
12161A
12261A
12362A
12462A
12563A
12663A
12764A
12864A
12965A
13065A
13166A
13266A

NCS domain segments:

Auth asym-ID: A / Label asym-ID: A

Dom-IDComponent-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDAuth seq-IDLabel seq-ID
111SERSERGLNGLN1 - 33634 - 369
211SERSERGLNGLN1 - 33634 - 369
322METMETALAALA-3 - 33730 - 370
422METMETALAALA-3 - 33730 - 370
533METMETALAALA-3 - 33730 - 370
633METMETALAALA-3 - 33730 - 370
744SERSERGLNGLN1 - 33634 - 369
844SERSERGLNGLN1 - 33634 - 369
955GLYGLYGLNGLN-2 - 33631 - 369
1055GLYGLYGLNGLN-2 - 33631 - 369
1166METMETALAALA-3 - 33730 - 370
1266METMETALAALA-3 - 33730 - 370
1377ARGARGGLNGLN-1 - 33632 - 369
1477ARGARGGLNGLN-1 - 33632 - 369
1588ARGARGGLNGLN-1 - 33632 - 369
1688ARGARGGLNGLN-1 - 33632 - 369
1799METMETALAALA-3 - 33730 - 370
1899METMETALAALA-3 - 33730 - 370
191010METMETALAALA-3 - 33730 - 370
201010METMETALAALA-3 - 33730 - 370
211111METMETALAALA-3 - 33730 - 370
221111METMETALAALA-3 - 33730 - 370
231212SERSERGLNGLN1 - 33634 - 369
241212SERSERGLNGLN1 - 33634 - 369
251313SERSERGLNGLN1 - 33634 - 369
261313SERSERGLNGLN1 - 33634 - 369
271414SERSERALAALA1 - 33734 - 370
281414SERSERALAALA1 - 33734 - 370
291515SERSERGLNGLN1 - 33634 - 369
301515SERSERGLNGLN1 - 33634 - 369
311616SERSERGLNGLN1 - 33634 - 369
321616SERSERGLNGLN1 - 33634 - 369
331717SERSERGLNGLN1 - 33634 - 369
341717SERSERGLNGLN1 - 33634 - 369
351818SERSERGLNGLN1 - 33634 - 369
361818SERSERGLNGLN1 - 33634 - 369
371919SERSERGLNGLN1 - 33634 - 369
381919SERSERGLNGLN1 - 33634 - 369
392020SERSERGLNGLN1 - 33634 - 369
402020SERSERGLNGLN1 - 33634 - 369
412121SERSERGLNGLN1 - 33634 - 369
422121SERSERGLNGLN1 - 33634 - 369
432222METMETALAALA-3 - 33730 - 370
442222METMETALAALA-3 - 33730 - 370
452323SERSERGLNGLN1 - 33634 - 369
462323SERSERGLNGLN1 - 33634 - 369
472424GLYGLYGLNGLN-2 - 33631 - 369
482424GLYGLYGLNGLN-2 - 33631 - 369
492525METMETALAALA-3 - 33730 - 370
502525METMETALAALA-3 - 33730 - 370
512626ARGARGGLNGLN-1 - 33632 - 369
522626ARGARGGLNGLN-1 - 33632 - 369
532727ARGARGGLNGLN-1 - 33632 - 369
542727ARGARGGLNGLN-1 - 33632 - 369
552828METMETALAALA-3 - 33730 - 370
562828METMETALAALA-3 - 33730 - 370
572929METMETALAALA-3 - 33730 - 370
582929METMETALAALA-3 - 33730 - 370
593030METMETALAALA-3 - 33730 - 370
603030METMETALAALA-3 - 33730 - 370
613131SERSERGLNGLN1 - 33634 - 369
623131SERSERGLNGLN1 - 33634 - 369
633232GLYGLYGLNGLN-2 - 33631 - 369
643232GLYGLYGLNGLN-2 - 33631 - 369
653333METMETALAALA-3 - 33730 - 370
663333METMETALAALA-3 - 33730 - 370
673434ARGARGGLNGLN-1 - 33632 - 369
683434ARGARGGLNGLN-1 - 33632 - 369
693535ARGARGGLNGLN-1 - 33632 - 369
703535ARGARGGLNGLN-1 - 33632 - 369
713636METMETALAALA-3 - 33730 - 370
723636METMETALAALA-3 - 33730 - 370
733737METMETALAALA-3 - 33730 - 370
743737METMETALAALA-3 - 33730 - 370
753838METMETALAALA-3 - 33730 - 370
763838METMETALAALA-3 - 33730 - 370
773939SERSERGLNGLN1 - 33634 - 369
783939SERSERGLNGLN1 - 33634 - 369
794040SERSERGLNGLN1 - 33634 - 369
804040SERSERGLNGLN1 - 33634 - 369
814141SERSERGLNGLN1 - 33634 - 369
824141SERSERGLNGLN1 - 33634 - 369
834242SERSERGLNGLN1 - 33634 - 369
844242SERSERGLNGLN1 - 33634 - 369
854343SERSERGLNGLN1 - 33634 - 369
864343SERSERGLNGLN1 - 33634 - 369
874444SERSERGLNGLN1 - 33634 - 369
884444SERSERGLNGLN1 - 33634 - 369
894545SERSERGLNGLN1 - 33634 - 369
904545SERSERGLNGLN1 - 33634 - 369
914646GLYGLYGLNGLN-2 - 33631 - 369
924646GLYGLYGLNGLN-2 - 33631 - 369
934747ARGARGGLNGLN-1 - 33632 - 369
944747ARGARGGLNGLN-1 - 33632 - 369
954848ARGARGGLNGLN-1 - 33632 - 369
964848ARGARGGLNGLN-1 - 33632 - 369
974949GLYGLYGLNGLN-2 - 33631 - 369
984949GLYGLYGLNGLN-2 - 33631 - 369
995050GLYGLYGLNGLN-2 - 33631 - 369
1005050GLYGLYGLNGLN-2 - 33631 - 369
1015151GLYGLYGLNGLN-2 - 33631 - 369
1025151GLYGLYGLNGLN-2 - 33631 - 369
1035252ARGARGGLNGLN-1 - 33632 - 369
1045252ARGARGGLNGLN-1 - 33632 - 369
1055353ARGARGGLNGLN-1 - 33632 - 369
1065353ARGARGGLNGLN-1 - 33632 - 369
1075454METMETALAALA-3 - 33730 - 370
1085454METMETALAALA-3 - 33730 - 370
1095555METMETALAALA-3 - 33730 - 370
1105555METMETALAALA-3 - 33730 - 370
1115656METMETALAALA-3 - 33730 - 370
1125656METMETALAALA-3 - 33730 - 370
1135757ARGARGALAALA-1 - 33732 - 370
1145757ARGARGALAALA-1 - 33732 - 370
1155858ARGARGGLNGLN-1 - 33632 - 369
1165858ARGARGGLNGLN-1 - 33632 - 369
1175959ARGARGGLNGLN-1 - 33632 - 369
1185959ARGARGGLNGLN-1 - 33632 - 369
1196060ARGARGGLNGLN-1 - 33632 - 369
1206060ARGARGGLNGLN-1 - 33632 - 369
1216161ARGARGGLNGLN-1 - 33632 - 369
1226161ARGARGGLNGLN-1 - 33632 - 369
1236262ARGARGGLNGLN-1 - 33632 - 369
1246262ARGARGGLNGLN-1 - 33632 - 369
1256363ARGARGGLNGLN-1 - 33632 - 369
1266363ARGARGGLNGLN-1 - 33632 - 369
1276464METMETALAALA-3 - 33730 - 370
1286464METMETALAALA-3 - 33730 - 370
1296565METMETALAALA-3 - 33730 - 370
1306565METMETALAALA-3 - 33730 - 370
1316666METMETALAALA-3 - 33730 - 370
1326666METMETALAALA-3 - 33730 - 370

NCS ensembles :
IDDetails
1Local NCS retraints between domains: 1 2
2Local NCS retraints between domains: 3 4
3Local NCS retraints between domains: 5 6
4Local NCS retraints between domains: 7 8
5Local NCS retraints between domains: 9 10
6Local NCS retraints between domains: 11 12
7Local NCS retraints between domains: 13 14
8Local NCS retraints between domains: 15 16
9Local NCS retraints between domains: 17 18
10Local NCS retraints between domains: 19 20
11Local NCS retraints between domains: 21 22
12Local NCS retraints between domains: 23 24
13Local NCS retraints between domains: 25 26
14Local NCS retraints between domains: 27 28
15Local NCS retraints between domains: 29 30
16Local NCS retraints between domains: 31 32
17Local NCS retraints between domains: 33 34
18Local NCS retraints between domains: 35 36
19Local NCS retraints between domains: 37 38
20Local NCS retraints between domains: 39 40
21Local NCS retraints between domains: 41 42
22Local NCS retraints between domains: 43 44
23Local NCS retraints between domains: 45 46
24Local NCS retraints between domains: 47 48
25Local NCS retraints between domains: 49 50
26Local NCS retraints between domains: 51 52
27Local NCS retraints between domains: 53 54
28Local NCS retraints between domains: 55 56
29Local NCS retraints between domains: 57 58
30Local NCS retraints between domains: 59 60
31Local NCS retraints between domains: 61 62
32Local NCS retraints between domains: 63 64
33Local NCS retraints between domains: 65 66
34Local NCS retraints between domains: 67 68
35Local NCS retraints between domains: 69 70
36Local NCS retraints between domains: 71 72
37Local NCS retraints between domains: 73 74
38Local NCS retraints between domains: 75 76
39Local NCS retraints between domains: 77 78
40Local NCS retraints between domains: 79 80
41Local NCS retraints between domains: 81 82
42Local NCS retraints between domains: 83 84
43Local NCS retraints between domains: 85 86
44Local NCS retraints between domains: 87 88
45Local NCS retraints between domains: 89 90
46Local NCS retraints between domains: 91 92
47Local NCS retraints between domains: 93 94
48Local NCS retraints between domains: 95 96
49Local NCS retraints between domains: 97 98
50Local NCS retraints between domains: 99 100
51Local NCS retraints between domains: 101 102
52Local NCS retraints between domains: 103 104
53Local NCS retraints between domains: 105 106
54Local NCS retraints between domains: 107 108
55Local NCS retraints between domains: 109 110
56Local NCS retraints between domains: 111 112
57Local NCS retraints between domains: 113 114
58Local NCS retraints between domains: 115 116
59Local NCS retraints between domains: 117 118
60Local NCS retraints between domains: 119 120
61Local NCS retraints between domains: 121 122
62Local NCS retraints between domains: 123 124
63Local NCS retraints between domains: 125 126
64Local NCS retraints between domains: 127 128
65Local NCS retraints between domains: 129 130
66Local NCS retraints between domains: 131 132

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Components

#1: Protein
Luciferase family protein / F420-dependent glucose-6-phosphate dehydrogenase


Mass: 42305.039 Da / Num. of mol.: 12
Source method: isolated from a genetically manipulated source
Details: Tag: MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGS
Source: (gene. exp.) Thermomicrobium roseum DSM 5159 (bacteria)
Gene: trd_A0676 / Plasmid: pTK005 / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: B9L4G2
#2: Chemical...
ChemComp-SO4 / SULFATE ION


Mass: 96.063 Da / Num. of mol.: 35 / Source method: obtained synthetically / Formula: SO4
#3: Chemical
ChemComp-CL / CHLORIDE ION


Mass: 35.453 Da / Num. of mol.: 19 / Source method: obtained synthetically / Formula: Cl
#4: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 320 / Source method: isolated from a natural source / Formula: H2O
Has ligand of interestN
Has protein modificationN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.5 Å3/Da / Density % sol: 51 %
Crystal growTemperature: 293 K / Method: vapor diffusion, sitting drop / pH: 4.6 / Details: 12% PEG4000, 0.1 M NaOAc pH 4.6, 0.2 M (NH4)2SO4

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: BESSY / Beamline: 14.1 / Wavelength: 0.9184 Å
DetectorType: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Mar 20, 2021
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.9184 Å / Relative weight: 1
ReflectionResolution: 2.51→50 Å / Num. obs: 167400 / % possible obs: 98 % / Redundancy: 6.4 % / Biso Wilson estimate: 36.4 Å2 / Rsym value: 0.454 / Net I/σ(I): 4.9
Reflection shellResolution: 2.51→2.67 Å / Redundancy: 5.4 % / Mean I/σ(I) obs: 0.8 / Num. unique obs: 25908 / Rsym value: 2.209 / % possible all: 94.1

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Processing

Software
NameVersionClassification
REFMAC5.8.0425refinement
XDSFeb 5, 2021data reduction
XDSFeb 5, 2021data scaling
PHASER2.8.3phasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.513→49.234 Å / Cor.coef. Fo:Fc: 0.91 / Cor.coef. Fo:Fc free: 0.881 / SU B: 39.723 / SU ML: 0.348 / Cross valid method: FREE R-VALUE / σ(F): -3 / ESU R: 0.653 / ESU R Free: 0.301
Details: Hydrogens have been added in their riding positions
RfactorNum. reflection% reflection
Rfree0.2571 8203 4.901 %
Rwork0.2305 159171 -
all0.232 --
obs-167374 98.094 %
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK BULK SOLVENT
Displacement parametersBiso mean: 39.419 Å2
Baniso -1Baniso -2Baniso -3
1--1.085 Å2-0 Å20.163 Å2
2--0.741 Å20 Å2
3---0.191 Å2
Refinement stepCycle: LAST / Resolution: 2.513→49.234 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms32314 0 194 320 32828
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0080.01233577
X-RAY DIFFRACTIONr_bond_other_d0.0010.01631257
X-RAY DIFFRACTIONr_angle_refined_deg1.6721.83145614
X-RAY DIFFRACTIONr_angle_other_deg0.5511.75571729
X-RAY DIFFRACTIONr_dihedral_angle_1_deg6.70954103
X-RAY DIFFRACTIONr_dihedral_angle_2_deg11.1185327
X-RAY DIFFRACTIONr_dihedral_angle_3_deg16.127105300
X-RAY DIFFRACTIONr_dihedral_angle_6_deg13.927101648
X-RAY DIFFRACTIONr_chiral_restr0.0730.24702
X-RAY DIFFRACTIONr_gen_planes_refined0.0060.0240917
X-RAY DIFFRACTIONr_gen_planes_other0.0010.028363
X-RAY DIFFRACTIONr_nbd_refined0.2040.26415
X-RAY DIFFRACTIONr_symmetry_nbd_other0.1880.228120
X-RAY DIFFRACTIONr_nbtor_refined0.1830.215689
X-RAY DIFFRACTIONr_symmetry_nbtor_other0.0820.217473
X-RAY DIFFRACTIONr_xyhbond_nbd_refined0.170.2652
X-RAY DIFFRACTIONr_symmetry_xyhbond_nbd_other0.0960.28
X-RAY DIFFRACTIONr_symmetry_nbd_refined0.2660.269
X-RAY DIFFRACTIONr_nbd_other0.2810.2202
X-RAY DIFFRACTIONr_symmetry_xyhbond_nbd_refined0.3190.212
X-RAY DIFFRACTIONr_mcbond_it2.2372.30116343
X-RAY DIFFRACTIONr_mcbond_other2.2372.30116343
X-RAY DIFFRACTIONr_mcangle_it3.5974.13220418
X-RAY DIFFRACTIONr_mcangle_other3.5974.13220419
X-RAY DIFFRACTIONr_scbond_it3.1762.64117234
X-RAY DIFFRACTIONr_scbond_other3.1652.63817223
X-RAY DIFFRACTIONr_scangle_it5.0744.69925179
X-RAY DIFFRACTIONr_scangle_other5.0574.69425162
X-RAY DIFFRACTIONr_lrange_it6.88723.72235798
X-RAY DIFFRACTIONr_lrange_other6.88223.72335786
X-RAY DIFFRACTIONr_ncsr_local_group_10.0360.0511377
X-RAY DIFFRACTIONr_ncsr_local_group_20.0330.0511516
X-RAY DIFFRACTIONr_ncsr_local_group_30.0310.0511505
X-RAY DIFFRACTIONr_ncsr_local_group_40.0330.0511371
X-RAY DIFFRACTIONr_ncsr_local_group_50.0270.0511478
X-RAY DIFFRACTIONr_ncsr_local_group_60.0420.0511489
X-RAY DIFFRACTIONr_ncsr_local_group_70.0330.0511433
X-RAY DIFFRACTIONr_ncsr_local_group_80.0280.0511446
X-RAY DIFFRACTIONr_ncsr_local_group_90.0290.0511577
X-RAY DIFFRACTIONr_ncsr_local_group_100.0310.0511513
X-RAY DIFFRACTIONr_ncsr_local_group_110.0380.0511465
X-RAY DIFFRACTIONr_ncsr_local_group_120.0270.0511364
X-RAY DIFFRACTIONr_ncsr_local_group_130.0290.0511347
X-RAY DIFFRACTIONr_ncsr_local_group_140.0340.0511343
X-RAY DIFFRACTIONr_ncsr_local_group_150.0260.0511376
X-RAY DIFFRACTIONr_ncsr_local_group_160.0370.0511346
X-RAY DIFFRACTIONr_ncsr_local_group_170.0320.0511334
X-RAY DIFFRACTIONr_ncsr_local_group_180.0270.0511350
X-RAY DIFFRACTIONr_ncsr_local_group_190.0310.0511376
X-RAY DIFFRACTIONr_ncsr_local_group_200.0230.0511380
X-RAY DIFFRACTIONr_ncsr_local_group_210.0350.0511291
X-RAY DIFFRACTIONr_ncsr_local_group_220.0320.0511550
X-RAY DIFFRACTIONr_ncsr_local_group_230.030.0511401
X-RAY DIFFRACTIONr_ncsr_local_group_240.0230.0511523
X-RAY DIFFRACTIONr_ncsr_local_group_250.0410.0511524
X-RAY DIFFRACTIONr_ncsr_local_group_260.0310.0511458
X-RAY DIFFRACTIONr_ncsr_local_group_270.0220.0511497
X-RAY DIFFRACTIONr_ncsr_local_group_280.0330.0511552
X-RAY DIFFRACTIONr_ncsr_local_group_290.0290.0511549
X-RAY DIFFRACTIONr_ncsr_local_group_300.0350.0511518
X-RAY DIFFRACTIONr_ncsr_local_group_310.0270.0511356
X-RAY DIFFRACTIONr_ncsr_local_group_320.0190.0511457
X-RAY DIFFRACTIONr_ncsr_local_group_330.0360.0511557
X-RAY DIFFRACTIONr_ncsr_local_group_340.0270.0511409
X-RAY DIFFRACTIONr_ncsr_local_group_350.0210.0511421
X-RAY DIFFRACTIONr_ncsr_local_group_360.0320.0511488
X-RAY DIFFRACTIONr_ncsr_local_group_370.0270.0511483
X-RAY DIFFRACTIONr_ncsr_local_group_380.0330.0511460
X-RAY DIFFRACTIONr_ncsr_local_group_390.0240.0511382
X-RAY DIFFRACTIONr_ncsr_local_group_400.040.0511363
X-RAY DIFFRACTIONr_ncsr_local_group_410.0240.0511461
X-RAY DIFFRACTIONr_ncsr_local_group_420.0230.0511391
X-RAY DIFFRACTIONr_ncsr_local_group_430.0310.0511393
X-RAY DIFFRACTIONr_ncsr_local_group_440.0270.0511378
X-RAY DIFFRACTIONr_ncsr_local_group_450.0330.0511341
X-RAY DIFFRACTIONr_ncsr_local_group_460.0350.0511454
X-RAY DIFFRACTIONr_ncsr_local_group_470.0250.0511441
X-RAY DIFFRACTIONr_ncsr_local_group_480.0170.0511488
X-RAY DIFFRACTIONr_ncsr_local_group_490.0260.0511488
X-RAY DIFFRACTIONr_ncsr_local_group_500.0210.0511481
X-RAY DIFFRACTIONr_ncsr_local_group_510.0280.0511448
X-RAY DIFFRACTIONr_ncsr_local_group_520.0430.0511386
X-RAY DIFFRACTIONr_ncsr_local_group_530.0360.0511406
X-RAY DIFFRACTIONr_ncsr_local_group_540.0380.0511498
X-RAY DIFFRACTIONr_ncsr_local_group_550.0340.0511482
X-RAY DIFFRACTIONr_ncsr_local_group_560.0450.0511430
X-RAY DIFFRACTIONr_ncsr_local_group_570.0260.0511415
X-RAY DIFFRACTIONr_ncsr_local_group_580.0340.0511402
X-RAY DIFFRACTIONr_ncsr_local_group_590.0270.0511399
X-RAY DIFFRACTIONr_ncsr_local_group_600.0340.0511368
X-RAY DIFFRACTIONr_ncsr_local_group_610.0250.0511454
X-RAY DIFFRACTIONr_ncsr_local_group_620.0180.0511448
X-RAY DIFFRACTIONr_ncsr_local_group_630.030.0511436
X-RAY DIFFRACTIONr_ncsr_local_group_640.030.0511521
X-RAY DIFFRACTIONr_ncsr_local_group_650.0350.0511483
X-RAY DIFFRACTIONr_ncsr_local_group_660.0340.0511441
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDTypeRms dev position (Å)Weight position
11AX-RAY DIFFRACTIONLocal ncs0.035750.05011
12AX-RAY DIFFRACTIONLocal ncs0.035750.05011
23AX-RAY DIFFRACTIONLocal ncs0.033470.05011
24AX-RAY DIFFRACTIONLocal ncs0.033470.05011
35AX-RAY DIFFRACTIONLocal ncs0.031390.05011
36AX-RAY DIFFRACTIONLocal ncs0.031390.05011
47AX-RAY DIFFRACTIONLocal ncs0.033490.0501
48AX-RAY DIFFRACTIONLocal ncs0.033490.0501
59AX-RAY DIFFRACTIONLocal ncs0.026870.05011
510AX-RAY DIFFRACTIONLocal ncs0.026870.05011
611AX-RAY DIFFRACTIONLocal ncs0.041790.05011
612AX-RAY DIFFRACTIONLocal ncs0.041790.05011
713AX-RAY DIFFRACTIONLocal ncs0.032960.05011
714AX-RAY DIFFRACTIONLocal ncs0.032960.05011
815AX-RAY DIFFRACTIONLocal ncs0.028350.05011
816AX-RAY DIFFRACTIONLocal ncs0.028350.05011
917AX-RAY DIFFRACTIONLocal ncs0.028840.05011
918AX-RAY DIFFRACTIONLocal ncs0.028840.05011
1019AX-RAY DIFFRACTIONLocal ncs0.030980.05011
1020AX-RAY DIFFRACTIONLocal ncs0.030980.05011
1121AX-RAY DIFFRACTIONLocal ncs0.038240.0501
1122AX-RAY DIFFRACTIONLocal ncs0.038240.0501
1223AX-RAY DIFFRACTIONLocal ncs0.026810.05011
1224AX-RAY DIFFRACTIONLocal ncs0.026810.05011
1325AX-RAY DIFFRACTIONLocal ncs0.029490.05011
1326AX-RAY DIFFRACTIONLocal ncs0.029490.05011
1427AX-RAY DIFFRACTIONLocal ncs0.033850.0501
1428AX-RAY DIFFRACTIONLocal ncs0.033850.0501
1529AX-RAY DIFFRACTIONLocal ncs0.025940.05011
1530AX-RAY DIFFRACTIONLocal ncs0.025940.05011
1631AX-RAY DIFFRACTIONLocal ncs0.036890.05011
1632AX-RAY DIFFRACTIONLocal ncs0.036890.05011
1733AX-RAY DIFFRACTIONLocal ncs0.032050.0501
1734AX-RAY DIFFRACTIONLocal ncs0.032050.0501
1835AX-RAY DIFFRACTIONLocal ncs0.026520.05011
1836AX-RAY DIFFRACTIONLocal ncs0.026520.05011
1937AX-RAY DIFFRACTIONLocal ncs0.030510.05011
1938AX-RAY DIFFRACTIONLocal ncs0.030510.05011
2039AX-RAY DIFFRACTIONLocal ncs0.023130.05011
2040AX-RAY DIFFRACTIONLocal ncs0.023130.05011
2141AX-RAY DIFFRACTIONLocal ncs0.035170.0501
2142AX-RAY DIFFRACTIONLocal ncs0.035170.0501
2243AX-RAY DIFFRACTIONLocal ncs0.032330.05011
2244AX-RAY DIFFRACTIONLocal ncs0.032330.05011
2345AX-RAY DIFFRACTIONLocal ncs0.029530.0501
2346AX-RAY DIFFRACTIONLocal ncs0.029530.0501
2447AX-RAY DIFFRACTIONLocal ncs0.023270.05011
2448AX-RAY DIFFRACTIONLocal ncs0.023270.05011
2549AX-RAY DIFFRACTIONLocal ncs0.041390.05011
2550AX-RAY DIFFRACTIONLocal ncs0.041390.05011
2651AX-RAY DIFFRACTIONLocal ncs0.031090.0501
2652AX-RAY DIFFRACTIONLocal ncs0.031090.0501
2753AX-RAY DIFFRACTIONLocal ncs0.02220.05011
2754AX-RAY DIFFRACTIONLocal ncs0.02220.05011
2855AX-RAY DIFFRACTIONLocal ncs0.033330.05011
2856AX-RAY DIFFRACTIONLocal ncs0.033330.05011
2957AX-RAY DIFFRACTIONLocal ncs0.028990.05011
2958AX-RAY DIFFRACTIONLocal ncs0.028990.05011
3059AX-RAY DIFFRACTIONLocal ncs0.035120.05011
3060AX-RAY DIFFRACTIONLocal ncs0.035120.05011
3161AX-RAY DIFFRACTIONLocal ncs0.026530.0501
3162AX-RAY DIFFRACTIONLocal ncs0.026530.0501
3263AX-RAY DIFFRACTIONLocal ncs0.018980.05011
3264AX-RAY DIFFRACTIONLocal ncs0.018980.05011
3365AX-RAY DIFFRACTIONLocal ncs0.036260.05011
3366AX-RAY DIFFRACTIONLocal ncs0.036260.05011
3467AX-RAY DIFFRACTIONLocal ncs0.026950.0501
3468AX-RAY DIFFRACTIONLocal ncs0.026950.0501
3569AX-RAY DIFFRACTIONLocal ncs0.021250.05011
3570AX-RAY DIFFRACTIONLocal ncs0.021250.05011
3671AX-RAY DIFFRACTIONLocal ncs0.032070.05011
3672AX-RAY DIFFRACTIONLocal ncs0.032070.05011
3773AX-RAY DIFFRACTIONLocal ncs0.027190.05011
3774AX-RAY DIFFRACTIONLocal ncs0.027190.05011
3875AX-RAY DIFFRACTIONLocal ncs0.03270.05011
3876AX-RAY DIFFRACTIONLocal ncs0.03270.05011
3977AX-RAY DIFFRACTIONLocal ncs0.02410.0501
3978AX-RAY DIFFRACTIONLocal ncs0.02410.0501
4079AX-RAY DIFFRACTIONLocal ncs0.039620.0501
4080AX-RAY DIFFRACTIONLocal ncs0.039620.0501
4181AX-RAY DIFFRACTIONLocal ncs0.023680.05011
4182AX-RAY DIFFRACTIONLocal ncs0.023680.05011
4283AX-RAY DIFFRACTIONLocal ncs0.023410.0501
4284AX-RAY DIFFRACTIONLocal ncs0.023410.0501
4385AX-RAY DIFFRACTIONLocal ncs0.031160.0501
4386AX-RAY DIFFRACTIONLocal ncs0.031160.0501
4487AX-RAY DIFFRACTIONLocal ncs0.026520.0501
4488AX-RAY DIFFRACTIONLocal ncs0.026520.0501
4589AX-RAY DIFFRACTIONLocal ncs0.033340.0501
4590AX-RAY DIFFRACTIONLocal ncs0.033340.0501
4691AX-RAY DIFFRACTIONLocal ncs0.035180.05011
4692AX-RAY DIFFRACTIONLocal ncs0.035180.05011
4793AX-RAY DIFFRACTIONLocal ncs0.024810.0501
4794AX-RAY DIFFRACTIONLocal ncs0.024810.0501
4895AX-RAY DIFFRACTIONLocal ncs0.017320.05011
4896AX-RAY DIFFRACTIONLocal ncs0.017320.05011
4997AX-RAY DIFFRACTIONLocal ncs0.026450.05011
4998AX-RAY DIFFRACTIONLocal ncs0.026450.05011
5099AX-RAY DIFFRACTIONLocal ncs0.021280.05011
50100AX-RAY DIFFRACTIONLocal ncs0.021280.05011
51101AX-RAY DIFFRACTIONLocal ncs0.028280.05011
51102AX-RAY DIFFRACTIONLocal ncs0.028280.05011
52103AX-RAY DIFFRACTIONLocal ncs0.042530.0501
52104AX-RAY DIFFRACTIONLocal ncs0.042530.0501
53105AX-RAY DIFFRACTIONLocal ncs0.035620.05011
53106AX-RAY DIFFRACTIONLocal ncs0.035620.05011
54107AX-RAY DIFFRACTIONLocal ncs0.038310.05011
54108AX-RAY DIFFRACTIONLocal ncs0.038310.05011
55109AX-RAY DIFFRACTIONLocal ncs0.033530.05011
55110AX-RAY DIFFRACTIONLocal ncs0.033530.05011
56111AX-RAY DIFFRACTIONLocal ncs0.045260.05011
56112AX-RAY DIFFRACTIONLocal ncs0.045260.05011
57113AX-RAY DIFFRACTIONLocal ncs0.025870.05011
57114AX-RAY DIFFRACTIONLocal ncs0.025870.05011
58115AX-RAY DIFFRACTIONLocal ncs0.033590.0501
58116AX-RAY DIFFRACTIONLocal ncs0.033590.0501
59117AX-RAY DIFFRACTIONLocal ncs0.027260.0501
59118AX-RAY DIFFRACTIONLocal ncs0.027260.0501
60119AX-RAY DIFFRACTIONLocal ncs0.034450.0501
60120AX-RAY DIFFRACTIONLocal ncs0.034450.0501
61121AX-RAY DIFFRACTIONLocal ncs0.024610.05011
61122AX-RAY DIFFRACTIONLocal ncs0.024610.05011
62123AX-RAY DIFFRACTIONLocal ncs0.018380.05011
62124AX-RAY DIFFRACTIONLocal ncs0.018380.05011
63125AX-RAY DIFFRACTIONLocal ncs0.030140.05011
63126AX-RAY DIFFRACTIONLocal ncs0.030140.05011
64127AX-RAY DIFFRACTIONLocal ncs0.030260.05011
64128AX-RAY DIFFRACTIONLocal ncs0.030260.05011
65129AX-RAY DIFFRACTIONLocal ncs0.034920.0501
65130AX-RAY DIFFRACTIONLocal ncs0.034920.0501
66131AX-RAY DIFFRACTIONLocal ncs0.033870.05011
66132AX-RAY DIFFRACTIONLocal ncs0.033870.05011
LS refinement shell

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 20

Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRfactor allNum. reflection allFsc freeFsc work% reflection obs (%)WRfactor Rwork
2.513-2.5780.3866080.382107670.382125920.90.89790.33510.377
2.578-2.6490.365450.371113700.371122330.9030.89597.40050.365
2.649-2.7250.3885900.375108980.376118980.8860.89896.5540.367
2.725-2.8090.3435280.333105100.333116100.9160.92295.07320.318
2.809-2.9010.3265220.306106410.307112280.9240.93699.42110.286
2.901-3.0020.3065470.292102530.293108310.9350.94499.71380.27
3.002-3.1150.3055180.27498980.275104490.9360.9599.68420.25
3.115-3.2420.2735580.25295050.253100890.9510.95999.74230.226
3.242-3.3850.2854690.23391990.23697090.9530.96699.57770.206
3.385-3.550.2824390.25287040.25492240.950.95999.12190.226
3.55-3.7410.2594690.23182390.23288560.9490.96598.32880.202
3.741-3.9660.2383820.20878930.2183020.9560.97199.67480.182
3.966-4.2380.1923510.15674570.15878170.9760.98599.88490.135
4.238-4.5750.1693400.1469550.14173120.9810.98899.76750.121
4.575-5.0070.1743400.15163660.15267280.9830.98799.6730.13
5.007-5.5910.2052810.17257020.17361030.9790.98598.03380.145
5.591-6.4420.1962820.17850870.17953840.9840.98599.72140.153
6.442-7.8560.2031950.16343610.16545760.9760.98599.56290.141
7.856-10.9720.1531410.13433830.13535780.9850.98898.49080.125
10.972-49.2340.238980.24919830.24820820.9660.96299.9520.236
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
11.40050.09630.06140.73470.05350.40420.0160.0172-0.0972-0.0101-0.00290.02170.1109-0.0719-0.01310.033-0.0139-0.00210.03440.00020.19990.421550.668132.2369
20.62590.0743-0.17741.02430.34061.083-0.0016-0.1380.10970.04240.021-0.0072-0.12730.0193-0.01940.0250.00840.00580.049-0.01950.19816.62676.430348.3544
30.86760.0050.2710.7084-0.18771.25630.0108-0.277-0.07050.1929-0.0001-0.01440.18980.0504-0.01070.10330.02480.00370.113-0.00520.203556.879358.573144.5854
41.16170.1907-0.10350.796-0.43530.95410.00230.10220.0893-0.0701-0.0026-0.0752-0.10370.11310.00020.0351-0.0180.01110.04180.00490.212264.227574.051614.4984
50.4115-0.1894-0.22890.78620.4150.86050.02490.1231-0.0824-0.1263-0.0405-0.02050.07640.11470.01560.05390.0475-0.00010.1743-0.00670.194740.170846.8141-10.5955
60.7768-0.02650.31740.45250.00050.91110.03950.19560.1459-0.1232-0.04630.1512-0.154-0.24310.00690.09450.0651-0.0010.2217-0.01410.236610.969864.9803-8.1775
70.81790.12040.13750.73460.19530.88270.00650.1524-0.091-0.0828-0.00250.04960.0986-0.0802-0.00390.0285-0.010.00890.0462-0.02430.222640.3884-14.506112.5177
80.6593-0.24940.22340.6918-0.30930.80420.00720.12090.0601-0.0933-0.00030.0436-0.1251-0.1433-0.00690.06020.03730.02040.1361-0.02880.196364.592113.9919-11.2985
90.8279-0.0802-0.28930.41360.01970.97090.00980.1342-0.1387-0.0994-0.0469-0.14130.15340.23170.03710.05270.05320.02620.1638-0.0220.254693.6482-4.584-9.4141
101.22120.13980.06950.78280.06270.3621-0.00470.01350.0786-0.0080.0061-0.0273-0.1110.1067-0.00130.0377-0.02520.01180.0542-0.00120.2037104.11388.081931.4781
110.7063-0.2210.12720.9689-0.17551.0308-0.0187-0.1897-0.1880.07070.01450.0230.2799-0.04590.00410.0927-0.00310.02130.08910.02270.244387.738-18.008347.1436
121.0012-0.0487-0.15850.51810.04121.1446-0.0087-0.23110.06380.136-0.0098-0.0139-0.1792-0.04170.01850.06850.010.00370.0597-0.00890.215747.4243-0.420743.3614
Refinement TLS groupSelection: ALL

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