+Open data
-Basic information
Entry | Database: PDB / ID: 9gwd | ||||||
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Title | ZT-KP6-1: AN EFFECTOR FROM ZYMOSEPTORIA TRITICI | ||||||
Components | Zt-KP6-1 | ||||||
Keywords | UNKNOWN FUNCTION / EFFECTOR FROM ZYMOSEPTORIA | ||||||
Function / homology | Uncharacterized protein Function and homology information | ||||||
Biological species | Zymoseptoria tritici ST99CH_1E4 (fungus) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Barthe, P. / de Guillen, K. | ||||||
Funding support | France, 1items
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Citation | Journal: To Be Published Title: Structural studies identify killer proteins 4 and 6 from the fungal wheat pathogen Zymoseptoria tritici toxic to fungi and related to structural effector families Authors: de Guillen, K. / Mammri, L. / Gracy, J. / Padilla, A. / Barthe, P. / Hoh, F. / Lahfa, M. / Rouffet, J. / Petit-Houdenot, Y. / Kroj, T. / Lebrun, M.H. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 9gwd.cif.gz | 551.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb9gwd.ent.gz | 471.5 KB | Display | PDB format |
PDBx/mmJSON format | 9gwd.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 9gwd_validation.pdf.gz | 466.5 KB | Display | wwPDB validaton report |
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Full document | 9gwd_full_validation.pdf.gz | 593.7 KB | Display | |
Data in XML | 9gwd_validation.xml.gz | 29.4 KB | Display | |
Data in CIF | 9gwd_validation.cif.gz | 48.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gw/9gwd ftp://data.pdbj.org/pub/pdb/validation_reports/gw/9gwd | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 9081.172 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Zymoseptoria tritici ST99CH_1E4 (fungus) Gene: ZT1E4_G3693 / Production host: Escherichia coli (E. coli) / References: UniProt: A0A2H1G421 |
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Has protein modification | Y |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 150 mM / Label: conditions_1 / pH: 5.4 / Pressure: 1 atm / Temperature: 303 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 800 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 3 / Details: RECOORD Procedure | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 20 / Conformers submitted total number: 20 |