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- PDB-9fvt: Crystal structure of marine sulfatase (OpSulf1) from Ochrovirga p... -
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Open data
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Basic information
Entry | Database: PDB / ID: 9fvt | ||||||
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Title | Crystal structure of marine sulfatase (OpSulf1) from Ochrovirga pacifica | ||||||
![]() | Sulfatase | ||||||
![]() | HYDROLASE / Sulfatase / CAZyme / marine / polysaccharides / mannan | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Solanki, V.A. / Krull, J. / Hehemann, J.H. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Crystal structure of marine sulfatase (OpSulf1) from Ochrovirga pacifica Authors: Solanki, V.A. / Krull, J. / Hehemann, J.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 797.5 KB | Display | ![]() |
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PDB format | ![]() | 671.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 59559.188 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-MG / #3: Water | ChemComp-HOH / | Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.37 Å3/Da / Density % sol: 48 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, sitting drop / pH: 7.5 Details: 20 % w/v Polyethylene glycol 3,350 200 mM Potassium chloride 20 % v/v Glycerol PH range: 7-8 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 16M / Detector: PIXEL / Date: Mar 3, 2023 |
Radiation | Monochromator: M / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.03319 Å / Relative weight: 1 |
Reflection | Resolution: 1.49→49.33 Å / Num. obs: 360000 / % possible obs: 99.9 % / Redundancy: 13.7 % / CC1/2: 0.999 / Rmerge(I) obs: 0.087 / Rpim(I) all: 0.024 / Rrim(I) all: 0.09 / Χ2: 1.01 / Net I/σ(I): 16.8 / Num. measured all: 4949008 |
Reflection shell | Resolution: 1.49→1.51 Å / % possible obs: 98.7 % / Redundancy: 13.2 % / Rmerge(I) obs: 1.786 / Num. measured all: 233469 / Num. unique obs: 17629 / CC1/2: 0.605 / Rpim(I) all: 0.508 / Rrim(I) all: 1.858 / Χ2: 1.04 / Net I/σ(I) obs: 1.7 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 1.49→49.33 Å
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LS refinement shell | Resolution: 1.49→1.51 Å /
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