PDB-9fun: Succinyl-CoA:(R)-benzylsuccinate CoA-transferase (BbsEF) + CoA + ...

ID or keywords:

Entry

Database: PDB / ID: 9fun

Title

Succinyl-CoA:(R)-benzylsuccinate CoA-transferase (BbsEF) + CoA + benzylsuccinate (weakly occupied)

Components

(Subunit of Benzylsuccinate CoA- ...) x 2

Keywords

TRANSFERASE / CoA transferase / toluene degradation

Function / homology

Function and homology information

CoA-transferase activity
Similarity search - Function

Biological species

Aromatoleum aromaticum EbN1 (bacteria)

Method

X-RAY DIFFRACTION /

SYNCHROTRON /

MOLECULAR REPLACEMENT / Resolution: 2 Å

Authors

Ermler, U. / Heider, J. / Demmer, U.

Funding support

1items

Citation

Journal: To Be Published
Title: Structure of the succinyl-CoA:(R)-benzylsuccinate CoA-transferase
Authors: Schuehle, K. / Demmer, U. / Heider, J. / Ermler, U.

History

Deposition	Jun 26, 2024	Deposition site: PDBE / Processing site: PDBE
Revision 1.0	Jan 14, 2026	Provider: repository / Type: Initial release

Structure viewer	Molecule: MolmilJmol/JSmol

-
Download

PDBx/mmCIF format	9fun.cif.gz	922.7 KB	Display	PDBx/mmCIF format
PDB format	pdb9fun.ent.gz	778.5 KB	Display	PDB format
PDBx/mmJSON format	9fun.json.gz		Tree view	PDBx/mmJSON format
Others	Other downloads

-
Validation report

Arichive directory	https://data.pdbj.org/pub/pdb/validation_reports/fu/9fun ftp://data.pdbj.org/pub/pdb/validation_reports/fu/9fun	HTTPS FTP

-
Related structure data

Related structure data	9fn0C 9folC C: citing same article (ref.)
Similar structure data	Similarity search - Function & homologyF&H Search Similarity search - FunctionF&H Search Similarity search - HomologyF&H Search

-
Links

PDB pages	PDBj / wwPDB / NCBI
Related items in Molecule of the Month	#146 - Feb 2012 Aminoglycoside Antibiotics similarity (1) #93 - Sep 2007 Citrate Synthase similarity (1) #154 - Oct 2012 Citric Acid Cycle similarity (1) #216 - Dec 2017 Biodegradable Plastic similarity (1) #39 - Mar 2003 lac Repressor similarity (1)

Deposited unit

A: Subunit of Benzylsuccinate CoA-transferase

B: Subunit of Benzylsuccinate CoA-transferase

C: Subunit of Benzylsuccinate CoA-transferase

D: Subunit of Benzylsuccinate CoA-transferase

hetero molecules

183 kDa, 4 polymers
Search similar-shape structures of this assembly by Omokage search (details)

1

A: Subunit of Benzylsuccinate CoA-transferase

B: Subunit of Benzylsuccinate CoA-transferase

hetero molecules

defined by author
Evidence: gel filtration
90.7 kDa, 2 polymers
Search similar-shape structures of this assembly by Omokage search (details)

2

C: Subunit of Benzylsuccinate CoA-transferase

D: Subunit of Benzylsuccinate CoA-transferase

hetero molecules

defined by author
92.1 kDa, 2 polymers
Search similar-shape structures of this assembly by Omokage search (details)

Unit cell

Length a, b, c (Å)	92.300, 101.290, 192.340
Angle α, β, γ (deg.)	90.00, 90.00, 90.00
Int Tables number	19
Space group name H-M	P2₁2₁2₁

-
Subunit of Benzylsuccinate CoA- ... , 2 types, 4 molecules ACBD

#1: Protein	Subunit of Benzylsuccinate CoA-transferase Mass: 45443.934 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Aromatoleum aromaticum EbN1 (bacteria) / Gene: bbsE, c2A312 / Production host: Escherichia coli (E. coli) / References: UniProt: Q5P687
#2: Protein	Subunit of Benzylsuccinate CoA-transferase Mass: 44795.652 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Aromatoleum aromaticum EbN1 (bacteria) / Gene: bbsF, c2A311 / Production host: Escherichia coli (E. coli) / References: UniProt: Q5P688

-
Non-polymers , 6 types, 715 molecules

#3: Chemical	ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL Mass: 92.094 Da / Num. of mol.: 9 / Source method: obtained synthetically / Formula: C₃H₈O₃
#4: Chemical	ChemComp-TRS / 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / TRIS BUFFER Mass: 122.143 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C₄H₁₂NO₃ / Comment: pH buffer*YM
#5: Chemical	ChemComp-COA / COENZYME A Mass: 767.534 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C₂₁H₃₆N₇O₁₆P₃S
#6: Chemical	ChemComp-BZS / L-BENZYLSUCCINIC ACID Mass: 208.211 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C₁₁H₁₂O₄ / Feature type: SUBJECT OF INVESTIGATION
#7: Chemical	ChemComp-PGE / TRIETHYLENE GLYCOL Mass: 150.173 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C₆H₁₄O₄ / Feature type: SUBJECT OF INVESTIGATION
#8: Water	ChemComp-HOH / water Mass: 18.015 Da / Num. of mol.: 700 / Source method: isolated from a natural source / Formula: H₂O

-
Details

Has ligand of interest	Y
Has protein modification	N

-
Experiment

Experiment	Method: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

Crystal	Density Matthews: 2.49 Å³/Da / Density % sol: 50.62 %
Crystal grow	Temperature: 277 K / Method: vapor diffusion, sitting drop / Details: PEG 10000, Tris/HCl, NaCl, glycerol

-
Data collection

Diffraction

Mean temperature: 100 K / Serial crystal experiment: N

Diffraction source

Source:

SYNCHROTRON / Site:

SLS

/ Beamline: X10SA / Wavelength: 1 Å

Detector

Type: DECTRIS EIGER X 16M / Detector: PIXEL / Date: Dec 8, 2018

Radiation

Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray

Radiation wavelength

Wavelength: 1 Å / Relative weight: 1

Reflection

Resolution: 2→48.976 Å / Num. obs: 119874 / % possible obs: 98.1 % / Redundancy: 5.7 % / CC_1/2: 0.999 / R_merge(I) obs: 0.085 / R_rim(I) all: 0.093 / Net I/σ(I): 17.47

Reflection shell

Resolution (Å)	R_merge(I) obs	Num. unique obs	CC_1/2	R_rim(I) all	Diffraction-ID
2-2.1	1.085	15634	0.741	1.19	1
2.1-2.3	0.63	24604	0.892	0.689	1
2.3-2.5	0.337	17355	0.962	0.369	1
2.5-3	0.149	25915	0.992	0.163	1
3-3.8	0.05	18220	0.998	0.055	1
3.8-4.7	0.031	8416	0.999	0.034	1
4.7-6	0.029	4979	0.999	0.032	1
6-8	0.025	2699	0.999	0.028	1
8-12	0.022	1409	0.999	0.025	1
12-50	0.021	638	0.999	0.023	1

-
Processing

Software

Name	Version	Classification
PHENIX	(1.20.1_4487: ???)	refinement
XSCALE		data scaling
XDS		data reduction
PHASER		phasing

Refinement

Method to determine structure:

MOLECULAR REPLACEMENT / Resolution: 2→48.976 Å / SU ML: 0.25 / Cross valid method: FREE R-VALUE / σ(F): 1.36 / Phase error: 23.27 / Stereochemistry target values: ML

	R_factor	Num. reflection	% reflection
R_free	0.2096	5890	4.91 %
R_work	0.1784	-	-
obs	0.1799	119874	98.08 %

Solvent computation

Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL

Refinement step

Cycle: LAST / Resolution: 2→48.976 Å

	Protein	Nucleic acid	Ligand	Solvent	Total
Num. atoms	12604	0	153	700	13457

Refine LS restraints

Refine-ID	Type	Dev ideal	Number
X-RAY DIFFRACTION	f_bond_d	0.005
X-RAY DIFFRACTION	f_angle_d	0.816
X-RAY DIFFRACTION	f_dihedral_angle_d	7.884	1903
X-RAY DIFFRACTION	f_chiral_restr	0.047	1867
X-RAY DIFFRACTION	f_plane_restr	0.008	2359

LS refinement shell

Resolution (Å)	R_factor R_free	Num. reflection R_free	R_factor R_work	Num. reflection R_work	Refine-ID	% reflection obs (%)
2-2.02	0.4419	171	0.3719	3434	X-RAY DIFFRACTION	89
2.02-2.05	0.3944	178	0.3434	3640	X-RAY DIFFRACTION	95
2.05-2.07	0.3378	179	0.3211	3775	X-RAY DIFFRACTION	98
2.07-2.1	0.3287	197	0.3086	3676	X-RAY DIFFRACTION	97
2.1-2.13	0.3089	195	0.2841	3797	X-RAY DIFFRACTION	99
2.13-2.15	0.3317	189	0.2766	3768	X-RAY DIFFRACTION	98
2.15-2.19	0.2845	220	0.2582	3772	X-RAY DIFFRACTION	99
2.19-2.22	0.3007	224	0.2469	3739	X-RAY DIFFRACTION	99
2.22-2.25	0.2631	191	0.2407	3778	X-RAY DIFFRACTION	98
2.25-2.29	0.2565	187	0.2116	3840	X-RAY DIFFRACTION	100
2.29-2.33	0.2498	187	0.2071	3728	X-RAY DIFFRACTION	98
2.33-2.37	0.2565	206	0.2069	3776	X-RAY DIFFRACTION	98
2.37-2.42	0.2142	186	0.1858	3810	X-RAY DIFFRACTION	99
2.42-2.47	0.2719	185	0.1849	3810	X-RAY DIFFRACTION	99
2.47-2.52	0.2106	209	0.1761	3779	X-RAY DIFFRACTION	99
2.52-2.58	0.2355	185	0.1818	3831	X-RAY DIFFRACTION	99
2.58-2.64	0.1976	197	0.1772	3808	X-RAY DIFFRACTION	99
2.64-2.71	0.2228	194	0.1773	3821	X-RAY DIFFRACTION	99
2.71-2.79	0.2246	192	0.1797	3829	X-RAY DIFFRACTION	99
2.79-2.88	0.2165	182	0.1905	3808	X-RAY DIFFRACTION	98
2.88-2.99	0.2211	188	0.1855	3806	X-RAY DIFFRACTION	98
2.99-3.11	0.2311	177	0.1796	3860	X-RAY DIFFRACTION	99
3.11-3.25	0.2054	208	0.1772	3825	X-RAY DIFFRACTION	99
3.25-3.42	0.2022	212	0.1693	3838	X-RAY DIFFRACTION	99
3.42-3.63	0.1937	208	0.1623	3840	X-RAY DIFFRACTION	99
3.63-3.91	0.1813	204	0.1465	3807	X-RAY DIFFRACTION	98
3.91-4.31	0.1443	203	0.136	3867	X-RAY DIFFRACTION	99
4.31-4.93	0.159	201	0.126	3937	X-RAY DIFFRACTION	99
4.93-6.21	0.18	205	0.152	3943	X-RAY DIFFRACTION	99
6.21-48.976	0.1743	230	0.1667	4042	X-RAY DIFFRACTION	98

Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

ID	L11 (°²)	L12 (°²)	L13 (°²)	L22 (°²)	L23 (°²)	L33 (°²)	S11 (Å °)	S12 (Å °)	S13 (Å °)	S21 (Å °)	S22 (Å °)	S23 (Å °)	S31 (Å °)	S32 (Å °)	S33 (Å °)	T11 (Å²)	T12 (Å²)	T13 (Å²)	T22 (Å²)	T23 (Å²)	T33 (Å²)	Origin x (Å)	Origin y (Å)	Origin z (Å)
1	3.2027	-0.8448	1.3548	3.1346	-0.1815	1.8308	0.1395	0.4112	-0.3731	-0.4347	-0.0447	-0.0325	0.3678	0.1449	-0.0902	0.5204	0.0301	0.0461	0.3237	-0.0942	0.2365	-14.5997	-24.3255	8.4388
2	1.1313	0.3562	0.0952	1.3787	0.2213	0.8834	0.0448	0.1775	-0.5912	-0.2864	-0.0787	-0.1438	0.4894	0.1004	0.0151	0.5958	0.0597	0.0236	0.3056	-0.1156	0.5259	-11.3155	-37.6819	17.3812
3	2.6895	-0.5195	-0.6434	1.8605	0.1785	1.6812	0.1261	0.11	-0.4849	-0.1177	-0.1356	-0.2498	0.3355	0.2318	0.009	0.4369	0.0394	-0.0049	0.2309	-0.0555	0.3829	-10.8466	-32.4673	25.3492
4	1.2134	-0.1225	0.03	1.1496	0.034	1.0931	0.0397	0.1326	-0.094	-0.137	-0.0607	-0.1275	0.1969	0.1045	0.0003	0.2864	0.0029	0.0293	0.2279	-0.0216	0.2242	-13.449	-14.3096	27.9259
5	0.5828	0.1085	-0.4862	2.4258	-1.7812	1.5633	0.0188	0.1941	0.0683	0.0738	-0.004	-0.1191	0.0752	0.1623	0.0139	0.1695	-0.0324	0.0338	0.2292	-0.034	0.2065	-20.5399	5.916	30.2026
6	1.8765	-0.0072	0.5388	3.1544	0.2702	1.5641	0.0236	-0.0342	0.2141	0.0379	-0.0255	-0.2536	0.0171	0.1617	-0.0322	0.1744	-0.0313	0.0468	0.2507	-0.0305	0.2182	-13.0926	17.1913	23.9184
7	1.4258	-0.0256	0.1627	3.2932	0.615	1.812	0.0597	0.0146	0.2414	-0.0806	-0.0534	0.1197	-0.1314	-0.0473	0.0147	0.1725	-0.0098	0.0291	0.2449	0.0011	0.2516	-18.7706	16.8908	21.6969
8	1.3282	-0.2925	0.1328	2.7903	0.1655	1.4094	-0.0626	0.2462	-0.0682	-0.6354	0.0821	-0.0049	0.2459	0.2422	-0.0998	0.5165	0.0407	0.0847	0.4068	-0.0368	0.2106	-8.8094	-8.6521	2.476
9	1.2042	0.1824	0.1021	4.7362	0.6774	1.1631	0.0158	0.6677	-0.7795	-0.6658	0.0956	0.0502	0.4464	-0.0403	-0.0651	0.807	0.0564	-0.0105	0.52	-0.2515	0.5642	-12.3924	-35.4463	1.2083
10	3.8483	0.124	-1.6344	1.8274	0.5815	4.4265	0.2567	0.0211	0.7128	-0.0892	-0.03	-0.2145	-0.5896	0.4689	-0.1977	0.2956	-0.0255	0.0504	0.3802	0.0203	0.4388	7.6566	-2.6004	30.0114
11	0.7549	-0.0524	-0.32	0.9093	-0.2632	1.0928	0.0228	0.0876	-0.0353	-0.1592	-0.0047	-0.1295	0.0686	0.1563	-0.0246	0.2517	0.0111	0.025	0.1914	-0.0388	0.189	-14.7065	-10.9539	26.7176
12	1.7211	0.8297	-0.4686	2.5709	-0.6675	2.1091	-0.0651	-0.2888	0.4184	0.2293	0.0791	-0.0789	-0.2735	-0.0798	0.0371	0.2824	0.0546	-0.0526	0.3167	-0.1299	0.336	-9.112	27.9122	-15.7651
13	0.9317	0.0626	0.4039	1.0292	0.4107	1.1907	-0.0371	-0.1196	0.1946	0.0202	0.0189	-0.0705	-0.0745	-0.0426	0.0048	0.1602	0.0153	0.0055	0.2007	-0.0233	0.2297	-10.7108	16.3715	-32.2158
14	1.2834	0.1407	0.7794	2.0595	1.0227	2.4339	0.1372	-0.0729	-0.2663	0.136	-0.0201	0.0581	0.6317	-0.1357	-0.0936	0.4057	-0.011	0.0031	0.2721	0.0372	0.228	-15.8619	-9.7726	-21.4649
15	1.7145	0.0773	0.2023	5.8214	-0.0617	2.3649	-0.182	-0.4987	0.807	0.8207	0.1086	-0.2451	-0.6416	0.0349	0.045	0.4636	0.0377	-0.1058	0.39	-0.2086	0.5027	-6.7118	35.1629	-6.3296
16	3.8115	0.7379	2.2132	2.502	1.8972	3.3787	0.0622	0.0021	-0.1582	-0.0476	0.0013	-0.1412	0.1977	0.083	-0.075	0.1638	0.0199	0.0327	0.19	0.0103	0.1929	2.4779	0.8115	-38.0188
17	3.102	-0.2021	-0.2968	3.4146	1.2119	1.5816	-0.0188	-0.2604	-0.0987	0.3436	0.0383	-0.2796	0.3345	0.0685	-0.053	0.3171	0.0294	-0.0312	0.233	-0.0144	0.2912	13.6632	-5.8778	-25.1852
18	4.2111	1.5512	-0.9896	1.8077	-0.2854	0.3808	-0.0358	-0.4619	-0.2465	0.3531	0.0361	-0.3374	0.1	0.1221	0.0217	0.3361	0.0865	-0.0326	0.3286	-0.0196	0.2363	1.7054	-3.1334	-18.5034
19	1.5402	0.0679	0.3198	1.8456	-0.0475	1.1594	-0.0139	-0.1012	0.0293	0.1497	0.052	0.0883	0.1826	-0.0886	0.02	0.2252	-0.026	0.0085	0.2724	-0.0071	0.1715	-18.7505	1.5753	-24.5891
20	2.5936	0.0397	-0.6499	1.3432	0.0434	0.9025	-0.0516	-0.2736	0.0751	0.214	0.0584	-0.1795	-0.0166	-0.0101	-0.0416	0.2302	0.028	-0.0365	0.2915	-0.0437	0.2027	-1.7334	9.0969	-17.3151
21	1.9331	-0.8178	0.6395	1.4773	-0.3185	1.0224	-0.1006	-0.3306	0.0261	0.2496	0.0322	0.0875	-0.0131	-0.233	-0.0572	0.1498	-0.0014	0.0221	0.2808	-0.0142	0.2054	-30.3087	14.2361	-28.74
22	3.5295	-0.5353	0.639	2.1274	0.1877	1.8461	-0.121	-0.5305	0.2685	0.447	0.2112	0.0375	-0.2387	-0.4244	0.0062	0.2723	0.0882	0.0084	0.3886	-0.0732	0.3244	-39.4449	27.0402	-26.6463
23	2.2689	-1.1514	0.5269	1.4052	0.5613	2.1233	-0.0253	-0.0902	0.0414	-0.0088	0.0688	0.2239	0.0244	-0.3235	-0.0198	0.1321	0.0107	-0.0077	0.2288	-0.0245	0.2511	-35.4294	20.8148	-37.66
24	2.1148	-1.1017	-0.2002	1.1603	0.1605	0.7718	0.0737	0.1083	0.1349	-0.0746	-0.0658	-0.0615	-0.0886	-0.0083	0.0162	0.1727	-0.0169	0.0083	0.19	0.0056	0.1809	-15.9278	16.8825	-43.155
25	2.2371	-1.462	0.2007	1.0401	-0.4215	1.098	0.1103	0.0967	0.1401	-0.1549	-0.0725	-0.267	-0.049	0.1004	-0.0218	0.1931	-0.0116	0.0423	0.2135	0.0198	0.2299	1.5899	9.4042	-43.0961
26	3.0114	-1.1637	0.2348	3.8705	-0.6979	1.6199	0.1451	0.3067	0.171	-0.3545	-0.1605	-0.4942	0.1859	0.2767	-0.036	0.3354	0.0686	0.0519	0.3613	-0.0238	0.3699	21.2852	-7.9881	-40.8101

Refinement TLS group

ID	Refine-ID	Refine TLS-ID	Selection details
1	X-RAY DIFFRACTION	1	chain 'A' and (resid 3 through 78 )
2	X-RAY DIFFRACTION	2	chain 'A' and (resid 79 through 107 )
3	X-RAY DIFFRACTION	3	chain 'A' and (resid 108 through 141 )
4	X-RAY DIFFRACTION	4	chain 'A' and (resid 142 through 220 )
5	X-RAY DIFFRACTION	5	chain 'A' and (resid 221 through 239 )
6	X-RAY DIFFRACTION	6	chain 'A' and (resid 240 through 266 )
7	X-RAY DIFFRACTION	7	chain 'A' and (resid 267 through 332 )
8	X-RAY DIFFRACTION	8	chain 'A' and (resid 333 through 367 )
9	X-RAY DIFFRACTION	9	chain 'A' and (resid 368 through 409 )
10	X-RAY DIFFRACTION	10	chain 'B' and (resid 4 through 124 )
11	X-RAY DIFFRACTION	11	chain 'B' and (resid 125 through 409 )
12	X-RAY DIFFRACTION	12	chain 'C' and (resid 2 through 110 )
13	X-RAY DIFFRACTION	13	chain 'C' and (resid 111 through 232 )
14	X-RAY DIFFRACTION	14	chain 'C' and (resid 233 through 367 )
15	X-RAY DIFFRACTION	15	chain 'C' and (resid 368 through 409 )
16	X-RAY DIFFRACTION	16	chain 'D' and (resid 4 through 79 )
17	X-RAY DIFFRACTION	17	chain 'D' and (resid 80 through 124 )
18	X-RAY DIFFRACTION	18	chain 'D' and (resid 125 through 148 )
19	X-RAY DIFFRACTION	19	chain 'D' and (resid 149 through 180 )
20	X-RAY DIFFRACTION	20	chain 'D' and (resid 181 through 228 )
21	X-RAY DIFFRACTION	21	chain 'D' and (resid 229 through 263 )
22	X-RAY DIFFRACTION	22	chain 'D' and (resid 264 through 294 )
23	X-RAY DIFFRACTION	23	chain 'D' and (resid 295 through 320 )
24	X-RAY DIFFRACTION	24	chain 'D' and (resid 321 through 349 )
25	X-RAY DIFFRACTION	25	chain 'D' and (resid 350 through 383 )
26	X-RAY DIFFRACTION	26	chain 'D' and (resid 384 through 409 )

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi

Thousand views of thousand structures

Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

+
Open data

-
Basic information

-
Structure visualization

-
Downloads & links

-
Download

-
Validation report

-
Related structure data

-
Links

-
Assembly

-
Components

-
Subunit of Benzylsuccinate CoA- ... , 2 types, 4 molecules ACBD

-
Non-polymers , 6 types, 715 molecules

-
Details

-
Experimental details

-
Experiment

-
Sample preparation

-
Data collection

-
Processing

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi

-Movie

-Structure viewers

+Viewer log

-This page

-This web site

-Options

+Open data

-Basic information

-Structure visualization

-Downloads & links

-Download

-Validation report

-Related structure data

-Links

-Assembly

-Components

-Subunit of Benzylsuccinate CoA- ... , 2 types, 4 molecules ACBD

-Non-polymers , 6 types, 715 molecules

-Details

-Experimental details

-Experiment

-Sample preparation

-Data collection

-Processing

+About Yorodumi

-News

-Feb 9, 2022. New format data for meta-information of EMDB entries

-Aug 12, 2020. Covid-19 info

+Mar 5, 2020. Novel coronavirus structure data

+Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+Jul 12, 2017. Major update of PDB

-Yorodumi

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

+
Open data

-
Basic information

-
Structure visualization

-
Downloads & links

-
Download

-
Validation report

-
Related structure data

-
Links

-
Assembly

-
Components

-
Subunit of Benzylsuccinate CoA- ... , 2 types, 4 molecules ACBD

-
Non-polymers , 6 types, 715 molecules

-
Details

-
Experimental details

-
Experiment

-
Sample preparation

-
Data collection

-
Processing

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi