| 登録情報 | データベース: PDB / ID: 9fmr |
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| タイトル | Structure of DDB1/Cdk12/Cyclin K with molecular glue SR-4835 |
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要素 | - Cyclin-K
- Cyclin-dependent kinase 12
- DNA damage-binding protein 1
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キーワード | TRANSCRIPTION / Cyclin-dependent kinase / CDK / cyclin / inhibitor / SR-4835 / molecular glue |
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| 機能・相同性 | 機能・相同性情報
cyclin K-CDK12 complex / cyclin K-CDK13 complex / nuclear cyclin-dependent protein kinase holoenzyme complex / regulation of MAP kinase activity / cyclin/CDK positive transcription elongation factor complex / host-mediated suppression of viral genome replication / negative regulation of intracellular estrogen receptor signaling pathway / negative regulation of stem cell differentiation / regulation of cyclin-dependent protein serine/threonine kinase activity / cyclin-dependent protein serine/threonine kinase activator activity ...cyclin K-CDK12 complex / cyclin K-CDK13 complex / nuclear cyclin-dependent protein kinase holoenzyme complex / regulation of MAP kinase activity / cyclin/CDK positive transcription elongation factor complex / host-mediated suppression of viral genome replication / negative regulation of intracellular estrogen receptor signaling pathway / negative regulation of stem cell differentiation / regulation of cyclin-dependent protein serine/threonine kinase activity / cyclin-dependent protein serine/threonine kinase activator activity / positive regulation by virus of viral protein levels in host cell / positive regulation of DNA-templated transcription, elongation / [RNA-polymerase]-subunit kinase / spindle assembly involved in female meiosis / epigenetic programming in the zygotic pronuclei / UV-damage excision repair / biological process involved in interaction with symbiont / regulation of mitotic cell cycle phase transition / WD40-repeat domain binding / Cul4A-RING E3 ubiquitin ligase complex / Cul4-RING E3 ubiquitin ligase complex / Cul4B-RING E3 ubiquitin ligase complex / ubiquitin ligase complex scaffold activity / negative regulation of reproductive process / negative regulation of developmental process / RNA polymerase II transcribes snRNA genes / viral release from host cell / cellular response to estrogen stimulus / HIV elongation arrest and recovery / Pausing and recovery of HIV elongation / cullin family protein binding / regulation of signal transduction / cyclin-dependent kinase / cyclin-dependent protein serine/threonine kinase activity / ectopic germ cell programmed cell death / positive regulation of viral genome replication / Formation of HIV elongation complex in the absence of HIV Tat / RNA Polymerase II Transcription Elongation / Formation of RNA Pol II elongation complex / negative regulation of MAPK cascade / RNA polymerase II CTD heptapeptide repeat kinase activity / RNA Polymerase II Pre-transcription Events / proteasomal protein catabolic process / positive regulation of gluconeogenesis / RNA splicing / cyclin binding / TP53 Regulates Transcription of DNA Repair Genes / nucleotide-excision repair / positive regulation of transcription elongation by RNA polymerase II / sperm end piece / SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription / Recognition of DNA damage by PCNA-containing replication complex / regulation of circadian rhythm / DNA Damage Recognition in GG-NER / Dual Incision in GG-NER / Transcription-Coupled Nucleotide Excision Repair (TC-NER) / Formation of TC-NER Pre-Incision Complex / Wnt signaling pathway / mRNA processing / Formation of Incision Complex in GG-NER / Dual incision in TC-NER / Gap-filling DNA repair synthesis and ligation in TC-NER / positive regulation of protein catabolic process / cellular response to UV / rhythmic process / site of double-strand break / sperm principal piece / Neddylation / sperm midpiece / transcription by RNA polymerase II / ubiquitin-dependent protein catabolic process / damaged DNA binding / proteasome-mediated ubiquitin-dependent protein catabolic process / protein-macromolecule adaptor activity / protein kinase activity / chromosome, telomeric region / nuclear speck / protein ubiquitination / cell division / protein serine kinase activity / DNA repair / apoptotic process / DNA damage response / protein kinase binding / negative regulation of apoptotic process / protein-containing complex binding / nucleolus / positive regulation of transcription by RNA polymerase II / protein-containing complex / : / DNA binding / extracellular exosome / nucleoplasm / ATP binding / nucleus / cytoplasm類似検索 - 分子機能 Cyclin-T2-like, C-terminal domain / Cyclin/Cyclin-like subunit Ssn8 / Cyclin, C-terminal domain / Cyclin_C / Cyclin, N-terminal / Cyclin, N-terminal domain / : / RSE1/DDB1/CPSF1 second beta-propeller / Cleavage/polyadenylation specificity factor, A subunit, C-terminal / Cleavage/polyadenylation specificity factor, A subunit, N-terminal ...Cyclin-T2-like, C-terminal domain / Cyclin/Cyclin-like subunit Ssn8 / Cyclin, C-terminal domain / Cyclin_C / Cyclin, N-terminal / Cyclin, N-terminal domain / : / RSE1/DDB1/CPSF1 second beta-propeller / Cleavage/polyadenylation specificity factor, A subunit, C-terminal / Cleavage/polyadenylation specificity factor, A subunit, N-terminal / : / CPSF A subunit region / RSE1/DDB1/CPSF1 first beta-propeller / Cyclin-like / domain present in cyclins, TFIIB and Retinoblastoma / Cyclin-like superfamily / : / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / WD40-repeat-containing domain superfamily / WD40/YVTN repeat-like-containing domain superfamily / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily類似検索 - ドメイン・相同性 Chem-RMF / Cyclin-K / DNA damage-binding protein 1 / Cyclin-dependent kinase 12類似検索 - 構成要素 |
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| 生物種 | Homo sapiens (ヒト) |
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| 手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 3.9 Å |
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データ登録者 | Anand, K. / Schmitz, M. / Geyer, M. |
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| 資金援助 | ドイツ, 1件 | 組織 | 認可番号 | 国 |
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| German Research Foundation (DFG) | EXC2151-390873048 | ドイツ |
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引用 | ジャーナル: Rsc Chem Biol / 年: 2024 タイトル: Discovery and design of molecular glue enhancers of CDK12-DDB1 interactions for targeted degradation of cyclin K. 著者: Ghosh, P. / Schmitz, M. / Pandurangan, T. / Zeleke, S.T. / Chan, S.C. / Mosior, J. / Sun, L. / Palve, V. / Grassie, D. / Anand, K. / Frydman, S. / Roush, W.R. / Schonbrunn, E. / Geyer, M. / ...著者: Ghosh, P. / Schmitz, M. / Pandurangan, T. / Zeleke, S.T. / Chan, S.C. / Mosior, J. / Sun, L. / Palve, V. / Grassie, D. / Anand, K. / Frydman, S. / Roush, W.R. / Schonbrunn, E. / Geyer, M. / Duckett, D. / Monastyrskyi, A. |
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| 履歴 | | 登録 | 2024年6月7日 | 登録サイト: PDBE / 処理サイト: PDBE |
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| 改定 1.0 | 2024年10月16日 | Provider: repository / タイプ: Initial release |
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| 改定 1.1 | 2025年4月30日 | Group: Database references / カテゴリ: citation / citation_author Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year |
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