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Yorodumi- PDB-9azk: Macrocyclic inhibitors targeting the prime site of the fibrinolyt... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 9azk | ||||||
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| Title | Macrocyclic inhibitors targeting the prime site of the fibrinolytic serine protease plasmin | ||||||
Components | Plasminogen | ||||||
Keywords | HYDROLASE/INHIBITOR / protease inhibitor / fibrinolysis / HYDROLASE-INHIBITOR complex | ||||||
| Function / homology | Function and homology informationplasmin / trans-synaptic signaling by BDNF, modulating synaptic transmission / trophoblast giant cell differentiation / tissue remodeling / tissue regeneration / Signaling by PDGF / mononuclear cell migration / positive regulation of fibrinolysis / negative regulation of cell-cell adhesion mediated by cadherin / protein antigen binding ...plasmin / trans-synaptic signaling by BDNF, modulating synaptic transmission / trophoblast giant cell differentiation / tissue remodeling / tissue regeneration / Signaling by PDGF / mononuclear cell migration / positive regulation of fibrinolysis / negative regulation of cell-cell adhesion mediated by cadherin / protein antigen binding / Dissolution of Fibrin Clot / myoblast differentiation / labyrinthine layer blood vessel development / biological process involved in interaction with symbiont / muscle cell cellular homeostasis / Activation of Matrix Metalloproteinases / apolipoprotein binding / extracellular matrix disassembly / negative regulation of fibrinolysis / negative regulation of cell-substrate adhesion / positive regulation of blood vessel endothelial cell migration / fibrinolysis / Degradation of the extracellular matrix / serine-type peptidase activity / platelet alpha granule lumen / protein processing / kinase binding / Schaffer collateral - CA1 synapse / Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) / blood coagulation / Platelet degranulation / protein-folding chaperone binding / : / protease binding / endopeptidase activity / blood microparticle / signaling receptor binding / protein domain specific binding / negative regulation of cell population proliferation / external side of plasma membrane / serine-type endopeptidase activity / glutamatergic synapse / enzyme binding / cell surface / proteolysis / extracellular space / extracellular exosome / extracellular region / plasma membrane Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.1 Å | ||||||
Authors | Guojie, W. | ||||||
| Funding support | 1items
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Citation | Journal: Chemmedchem / Year: 2024Title: Macrocyclic Inhibitors Targeting the Prime Site of the Fibrinolytic Serine Protease Plasmin. Authors: Wiedemeyer, S.J.A. / Wu, G. / Lang-Henkel, H. / Whisstock, J.C. / Law, R.H.P. / Steinmetzer, T. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 9azk.cif.gz | 713.1 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb9azk.ent.gz | Display | PDB format | |
| PDBx/mmJSON format | 9azk.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 9azk_validation.pdf.gz | 1.7 MB | Display | wwPDB validaton report |
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| Full document | 9azk_full_validation.pdf.gz | 1.8 MB | Display | |
| Data in XML | 9azk_validation.xml.gz | 73.6 KB | Display | |
| Data in CIF | 9azk_validation.cif.gz | 92.5 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/az/9azk ftp://data.pdbj.org/pub/pdb/validation_reports/az/9azk | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 5ugdS S: Starting model for refinement |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: ens_1
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
Citation
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