+
Open data
-
Basic information
Entry | Database: PDB / ID: 8xwx | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | Crystal structure of FIS1-BAP31 complex from human | |||||||||
![]() |
| |||||||||
![]() | APOPTOSIS / MAM complex / mitochondria / ER. | |||||||||
Function / homology | ![]() positive regulation of retrograde protein transport, ER to cytosol / response to flavonoid / negative regulation of fatty acid transport / negative regulation of ATP metabolic process / response to fluoride / response to hypobaric hypoxia / Class I peroxisomal membrane protein import / protein localization to endoplasmic reticulum exit site / Apoptotic execution phase / positive regulation of ERAD pathway ...positive regulation of retrograde protein transport, ER to cytosol / response to flavonoid / negative regulation of fatty acid transport / negative regulation of ATP metabolic process / response to fluoride / response to hypobaric hypoxia / Class I peroxisomal membrane protein import / protein localization to endoplasmic reticulum exit site / Apoptotic execution phase / positive regulation of ERAD pathway / mitochondria-associated endoplasmic reticulum membrane contact site / perinuclear endoplasmic reticulum / peroxisome fission / mitochondrial fragmentation involved in apoptotic process / cellular response to peptide / cellular response to toxic substance / mitochondrial fission / positive regulation of ubiquitin-dependent protein catabolic process / cellular response to lipid / clathrin-coated vesicle / peroxisomal membrane / protein targeting to mitochondrion / Golgi cisterna membrane / positive regulation of mitochondrial fission / Apoptotic cleavage of cellular proteins / response to muscle activity / RSV-host interactions / MHC class I protein binding / RHOA GTPase cycle / endoplasmic reticulum to Golgi vesicle-mediated transport / positive regulation of intrinsic apoptotic signaling pathway / lipid droplet / endoplasmic reticulum-Golgi intermediate compartment membrane / response to endoplasmic reticulum stress / lumenal side of endoplasmic reticulum membrane / mitochondrion organization / Antigen Presentation: Folding, assembly and peptide loading of class I MHC / intracellular protein transport / cellular response to glucose stimulus / response to nutrient levels / peroxisome / positive regulation of neuron apoptotic process / spermatogenesis / molecular adaptor activity / mitochondrial outer membrane / Golgi membrane / apoptotic process / lipid binding / endoplasmic reticulum membrane / protein-containing complex binding / endoplasmic reticulum / protein-containing complex / mitochondrion / identical protein binding / membrane / plasma membrane / cytosol Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Nguyen, M.D. / Bong, S.M. / Lee, B.I. | |||||||||
Funding support | ![]()
| |||||||||
![]() | ![]() Title: Crystal structure of Fis1 and Bap31 provides information on protein-protein interactions at mitochondria-associated ER membranes. Authors: Nguyen, M.D. / Kim, Y. / Bae, S.H. / Kim, S. / Yeo, H.K. / Ha, N.C. / Cho, G. / Moon, S. / Cho, K.H. / Jang, H. / Bong, S.M. / Lee, B.I. #1: Journal: Acta Crystallogr D Struct Biol / Year: 2019 Title: Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Authors: Dorothee Liebschner / Pavel V Afonine / Matthew L Baker / Gábor Bunkóczi / Vincent B Chen / Tristan I Croll / Bradley Hintze / Li Wei Hung / Swati Jain / Airlie J McCoy / Nigel W Moriarty ...Authors: Dorothee Liebschner / Pavel V Afonine / Matthew L Baker / Gábor Bunkóczi / Vincent B Chen / Tristan I Croll / Bradley Hintze / Li Wei Hung / Swati Jain / Airlie J McCoy / Nigel W Moriarty / Robert D Oeffner / Billy K Poon / Michael G Prisant / Randy J Read / Jane S Richardson / David C Richardson / Massimo D Sammito / Oleg V Sobolev / Duncan H Stockwell / Thomas C Terwilliger / Alexandre G Urzhumtsev / Lizbeth L Videau / Christopher J Williams / Paul D Adams / ![]() ![]() ![]() Abstract: Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful methods to determine three-dimensional macromolecular structures, which are required to understand biological ...Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful methods to determine three-dimensional macromolecular structures, which are required to understand biological processes and to develop new therapeutics against diseases. The overall structure-solution workflow is similar for these techniques, but nuances exist because the properties of the reduced experimental data are different. Software tools for structure determination should therefore be tailored for each method. Phenix is a comprehensive software package for macromolecular structure determination that handles data from any of these techniques. Tasks performed with Phenix include data-quality assessment, map improvement, model building, the validation/rebuilding/refinement cycle and deposition. Each tool caters to the type of experimental data. The design of Phenix emphasizes the automation of procedures, where possible, to minimize repetitive and time-consuming manual tasks, while default parameters are chosen to encourage best practice. A graphical user interface provides access to many command-line features of Phenix and streamlines the transition between programs, project tracking and re-running of previous tasks. | |||||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 299.8 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 203.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 507.7 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 516.5 KB | Display | |
Data in XML | ![]() | 22.2 KB | Display | |
Data in CIF | ![]() | 30.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Unit cell |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
|