+Open data
-Basic information
Entry | Database: PDB / ID: 8xth | ||||||
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Title | Thanatin PM15Y in LPS | ||||||
Components | Thanatin | ||||||
Keywords | ANTIMICROBIAL PROTEIN / STRUCTURE FROM CYANA 2.1 | ||||||
Function / homology | defense response to fungus / killing of cells of another organism / defense response to bacterium / innate immune response / extracellular region / Thanatin Function and homology information | ||||||
Biological species | Podisus maculiventris (spined soldier bug) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Authors | Swaleeha, A. / Bhattacharrya, S. | ||||||
Funding support | 1items
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Citation | Journal: To Be Published Title: Thanatin VF16QK in LPS Authors: Swaleeha, A. / Bhattacharrya, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8xth.cif.gz | 112.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8xth.ent.gz | 84.1 KB | Display | PDB format |
PDBx/mmJSON format | 8xth.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/xt/8xth ftp://data.pdbj.org/pub/pdb/validation_reports/xt/8xth | HTTPS FTP |
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-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1909.308 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Podisus maculiventris (spined soldier bug) / References: UniProt: P55788 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution / Contents: 300 uM Thanatin PM15Y in LPS, 90% H2O/10% D2O / Label: Thanatin PM15Y in LPS / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 300 uM / Component: Thanatin PM15Y in LPS / Isotopic labeling: none |
Sample conditions | Ionic strength: 0 mM / Label: conditions_1 / pH: 5 / Pressure: 1 atm / Temperature: 278 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 2 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |